Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,619,755 – 6,619,870 |
Length | 115 |
Max. P | 0.539083 |
Location | 6,619,755 – 6,619,870 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 78.68 |
Mean single sequence MFE | -30.48 |
Consensus MFE | -21.86 |
Energy contribution | -22.92 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.09 |
Mean z-score | -1.02 |
Structure conservation index | 0.72 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539083 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6619755 115 - 22224390 AAGCCGGCACAAUCGCAACGAGGAGAGCGGCAUCUCGUUGUGGAUCAAUGAGCAGCAGCUCAAAAUGCUUACAGGUUGGUG-GUCGCUAAUGCCUAUAUGCUUGUCUUCAAAAAAA ((((.((((...((((((((((..(.....)..)))))))))).....(((((....)))))...))))...((((((((.-...))))..))))....))))............. ( -32.60) >DroSec_CAF1 13876 107 - 1 AAGCCGGCACAAUCGCAACGAGGAGAGCGGCAUCUCGUUGUGGAUCAACGAGCAGCAGCUCAAAAUGCUUACAGGUUGGUG-GUCACUAAAGCC-------UUGUCUUCAGA-AAA ......((......))...(((((((((.((..(((((((.....)))))))..)).))))...........((((((((.-...))))..)))-------)..)))))...-... ( -30.50) >DroSim_CAF1 11739 107 - 1 AAGCCGGCACAAUCGCAACGAGGAGAGCGGCAUCUCGUUGUGGAUCAACGAGCAGCAGCUCAAAAUGCUUACAGGUUGGUG-GUCACUAAAGCC-------UUGUCUUCAGA-AAA ......((......))...(((((((((.((..(((((((.....)))))))..)).))))...........((((((((.-...))))..)))-------)..)))))...-... ( -30.50) >DroEre_CAF1 7722 94 - 1 CAGCCGGCACAAUCGCAACGAGGAGAGCGGCAUCUCGUUGUGGAUCAAUGAGCAGCAGCUCAAAAUGCUUACAGGUUGGUG-AUC--------------------CUUGAGA-AAC (((((((((...((((((((((..(.....)..)))))))))).....(((((....)))))...))))....)))))...-...--------------------.......-... ( -29.80) >DroYak_CAF1 8137 109 - 1 AAGCCGGCACAAUCGCAACGAGGAGAGCGGCAUCUCGUUGUGGAUCAACGAGCAGCAGCUCAAAAUGCUUACAGGUUGGUG-AAU---AAUGCCUA--ACCUCGUUUUUAGC-AAA ..((..((......))(((((((.((((.((..(((((((.....)))))))..)).))))...........((((.....-...---...)))).--.)))))))....))-... ( -34.70) >DroPer_CAF1 28966 93 - 1 CAAUCGCCACAAUCGGAUGGAGGAGAACGGCAUUUCGCUGUGGAUCAAUGAGCAGCAGCUGAAGAUGCUGAGCGGUGAGCAGACC--------------------CCUGA---AAA ...(((((..............((..(((((.....)))))...))...(..(((((........)))))..)))))).(((...--------------------.))).---... ( -24.80) >consensus AAGCCGGCACAAUCGCAACGAGGAGAGCGGCAUCUCGUUGUGGAUCAACGAGCAGCAGCUCAAAAUGCUUACAGGUUGGUG_AUC___AA_GCC_______UUGUCUUCAGA_AAA ..((((((....(((((((((((.(.....).)))))))))))......((((....)))).............)))))).................................... (-21.86 = -22.92 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:08 2006