Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,616,476 – 6,616,585 |
Length | 109 |
Max. P | 0.842319 |
Location | 6,616,476 – 6,616,585 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 96.94 |
Mean single sequence MFE | -26.07 |
Consensus MFE | -24.82 |
Energy contribution | -24.93 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -1.99 |
Structure conservation index | 0.95 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.842319 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6616476 109 - 22224390 CGAGAUGUAUUGUGUUGAAUAAAUAAAUUAUUAGGUAAAGUGCAAUUCGCCGAAUUGCCGAGCACAAAAACAAUUUGCGUUCUGUUUAUUUUUGCGCAAUCCAAUCCAG .(.(((..(((((((.(((((((((..............(.(((((((...))))))))((((.((((.....)))).)))))))))))))..)))))))...)))).. ( -27.30) >DroSec_CAF1 10616 109 - 1 CGAGAUGUAUUGUGUUUAAUAAAUAAAUAAUUAGGCAAAGUGCAAUUCGCCGAAUUGCCGAGCACAAAAACAAUUUGCGUUCUGUUUAUUUUUGCGCAAUCCAAUCCAG .(.(((..(((((((..((((((((........(((((.(.((.....)))...)))))((((.((((.....)))).))))))))))))...)))))))...)))).. ( -28.00) >DroSim_CAF1 2875 109 - 1 CGAGAUGUAUUGUGGUUAAUAAAUAAAUAAUUAGGUAAAAUGCAAUUCGCCGAAUUGCCGAGCACAAAAACAAUUUGCGUUCUGUUUAUUUUUGCGCAAUCCAAUCCAG .(.(((..((((((...((((((((................(((((((...))))))).((((.((((.....)))).))))))))))))....))))))...)))).. ( -22.90) >consensus CGAGAUGUAUUGUGUUUAAUAAAUAAAUAAUUAGGUAAAGUGCAAUUCGCCGAAUUGCCGAGCACAAAAACAAUUUGCGUUCUGUUUAUUUUUGCGCAAUCCAAUCCAG .(.(((..(((((((..((((((((........(((((...((.....))....)))))((((.((((.....)))).))))))))))))...)))))))...)))).. (-24.82 = -24.93 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:05 2006