Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,609,400 – 6,609,520 |
Length | 120 |
Max. P | 0.844722 |
Location | 6,609,400 – 6,609,520 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.17 |
Mean single sequence MFE | -37.34 |
Consensus MFE | -26.97 |
Energy contribution | -27.53 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.08 |
Mean z-score | -2.34 |
Structure conservation index | 0.72 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.844722 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6609400 120 + 22224390 CCAUAAUCGUCAGGAACACGGCGCGAAGGGGUAGAGGCAUCAGAUCAUCCGAAAAUGGCAUCAACCGUGCCACGUUUAAUGCAUCCUUGAAUGCAAAAAAACCAAAGUUGUGCCGUGUUA ..............((((((((((((...(((....((((((((((((..(((..((((((.....))))))..))).))).)))..)).))))......)))....)))))))))))). ( -38.70) >DroEre_CAF1 25647 120 + 1 CCGUAUUCAUCAGAAACACGGCGCGAAGGGGCAAAUCCUUCAGAUCAUCCGAAAGCGGCAUCAAUCGUGCCACGUUUAAGGCAACCAUCGAUGCAAAAAAAACAAAGUUAUGCCGUGUGA ...............(((((((((((((((.....))))))...((....))..)).(((((.((..((((........))))...)).))))).................))))))).. ( -35.10) >DroYak_CAF1 23873 120 + 1 CCAUAUUCGUGCGAAACACGGCGCGAAGGGGCAAAGCCUUCAGAACAUCCGAGAGCGGCAUCAAUCGUGCCACGUUUAAGGCAACCAAAGAUGCAAAGAAACCAAUGUUGUGCCGUGUGC .....(((....)))((((((((((((((.......)))))..(((((.........(((((.....((((........))))......)))))..........)))))))))))))).. ( -38.21) >consensus CCAUAUUCGUCAGAAACACGGCGCGAAGGGGCAAAGCCUUCAGAUCAUCCGAAAGCGGCAUCAAUCGUGCCACGUUUAAGGCAACCAUAGAUGCAAAAAAACCAAAGUUGUGCCGUGUGA ...............((((((((((((((.......)))))............((((((((.....))))).........(((........)))............)))))))))))).. (-26.97 = -27.53 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:04 2006