Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,604,951 – 6,605,071 |
Length | 120 |
Max. P | 0.668447 |
Location | 6,604,951 – 6,605,071 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.63 |
Mean single sequence MFE | -31.15 |
Consensus MFE | -21.49 |
Energy contribution | -23.67 |
Covariance contribution | 2.19 |
Combinations/Pair | 1.13 |
Mean z-score | -1.74 |
Structure conservation index | 0.69 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.668447 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6604951 120 + 22224390 GACGCCACAGAUGUUGUUGUCAUUCCUUUGACGACGCCGUUUUGUGCUGCCUCCUUUAGAAACGUUAAUUAAGUUCCAAGAAAUGAAUGGAAAUGUGUUUUAUUUUAUACAUUGCGUAUU ((.((((((((((.((((((((......)))))))).)).))))))..)).))........((((.........((((.........))))(((((((........)))))))))))... ( -27.00) >DroSec_CAF1 20017 119 + 1 GGCGCCACAGAUGUUGUUGUCAUUCCUUUGACGACGCCGUUCUGUGCUGCCUUCUUUAGAAACGUUAAUUAAGGUUU-AGAAAUGAAUAGAAAUCUGUUUCUGUUUAUACAUUGCGUAUU ((((.((((((((.((((((((......)))))))).)).)))))).))))((((....((((.((....)).))))-))))(((((((((((....)))))))))))............ ( -36.20) >DroSim_CAF1 17275 119 + 1 GGCGCCACAGAUGUUGUUGUCAUUCCUUUGACGACGCCGUUCUGUGCUGCCUUCUUUAGAAACGUUAAUUAAGGUUU-AGAAAUGAAUAGAACUCUGUUUCUGUUUAUACAUUGCGUAUU ((((.((((((((.((((((((......)))))))).)).)))))).))))((((....((((.((....)).))))-))))((((((((((......))))))))))............ ( -35.10) >DroEre_CAF1 21253 114 + 1 AGCGCCACAGAUGU---UGUCAUUGCUUUGGCGACGCCGUUGUGUGCUGCCUCCUUCAGAAACGUUAAUUAGGUUUG-AAGAAUGAAAGCAAACC-G-CUCUGUUUAUACAUUGUAUAUA ((((.(((((.(((---(((((......))))))))...)))))((((..(..(((((((..(........).))))-)))...)..))))...)-)-)).....(((((...))))).. ( -26.30) >consensus GGCGCCACAGAUGUUGUUGUCAUUCCUUUGACGACGCCGUUCUGUGCUGCCUCCUUUAGAAACGUUAAUUAAGGUUU_AGAAAUGAAUAGAAAUCUGUUUCUGUUUAUACAUUGCGUAUU ((((.((((((((.((((((((......)))))))).)).)))))).))))...............................((((((((((......))))))))))............ (-21.49 = -23.67 + 2.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:03 2006