Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,600,501 – 6,600,621 |
Length | 120 |
Max. P | 0.505969 |
Location | 6,600,501 – 6,600,621 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.83 |
Mean single sequence MFE | -37.42 |
Consensus MFE | -33.58 |
Energy contribution | -34.38 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.26 |
Structure conservation index | 0.90 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.505969 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6600501 120 + 22224390 GCUCAAUGCUCGCCACAUGCACGGACACGACAACUCCGUGUUCUCCGUGGACGAGACCUUGCCCUCCAACGGACGUCCUGCCCAACUUCCGCAGCAUCUGCAGAUGUCCAGCAAUGGAUA ((((((.(((((((((..(((((((.........))))))).....)))).)))).).))).........(((((((.(((.........)))((....)).))))))))))........ ( -37.00) >DroSec_CAF1 15852 120 + 1 GCUCAAUGCCCGCCACAUGCACGGACACGACAACUCCGUGUUCUCCGUGGACGAGACCCUGCCCUCCAACGGACGUCCUGCCCAACUGCCGCAGCAUCUGCAGAUGUCCAGCAAUGGCUA ((.((.(((.((((((..(((((((.........))))))).....)))).)).................(((((((.(((.....(((....)))...)))))))))).))).)))).. ( -38.20) >DroSim_CAF1 13233 120 + 1 GCUCAAUGCCCGCCACAUGCACGGACACGACAACUCCGUGUUCUCCGUGGACGAGACCCUGCCCUCCAACGGACGUCCUGCCCAACUGCCGCAGCAUCUGCAGAUGUCCAGCAAUGGCUA ((.((.(((.((((((..(((((((.........))))))).....)))).)).................(((((((.(((.....(((....)))...)))))))))).))).)))).. ( -38.20) >DroEre_CAF1 16086 120 + 1 GCUCAAUGCUCGCCACAUGCACGGACACGACAACUCCGUGUUCUCCGUGGACGAGACCCUGCCCUCCAACGGUCGUCCUGCCCAACUGCCGCAGCAUCUGCAGAUGUCCAGCAAUGGCUA ((.....))..((((..(((..(((((((.......)))))))....((((((.((((.(........).))))...((((.....(((....)))...)))).))))))))).)))).. ( -37.60) >DroYak_CAF1 15547 120 + 1 GCUCAAUGCUCGCCACAUGCACGGACACGACAACUCCGUGUUCUCCGUGGACGAGACCCUGCCCUCCAACGGACGUCCUGCCCAACUGCCGCAGCAUCUGCAAAUGUCCAGCAAUGGCUA ((.((.((((((((((..(((((((.........))))))).....)))).)))................((((((..(((.....(((....)))...))).)))))).))).)))).. ( -36.10) >consensus GCUCAAUGCUCGCCACAUGCACGGACACGACAACUCCGUGUUCUCCGUGGACGAGACCCUGCCCUCCAACGGACGUCCUGCCCAACUGCCGCAGCAUCUGCAGAUGUCCAGCAAUGGCUA ((.((.(((.((((((..(((((((.........))))))).....)))).)).................(((((((.(((.....(((....)))...)))))))))).))).)))).. (-33.58 = -34.38 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:59 2006