Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,599,745 – 6,599,865 |
Length | 120 |
Max. P | 0.545730 |
Location | 6,599,745 – 6,599,865 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.97 |
Mean single sequence MFE | -48.55 |
Consensus MFE | -43.71 |
Energy contribution | -43.65 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.11 |
Mean z-score | -1.54 |
Structure conservation index | 0.90 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.545730 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6599745 120 + 22224390 GGAGCGCAAGGCCAUCGGUGAGGGUGACCGCCAGACGUCUAGCGGCAAACCAGUGAGCCUGUGGCAAGUUAUCAAGAAUCCGGCAAUGAUCAUGUUGAUGAUUGCCGCGUCCAUCCGUCA (((.(((...(((((.(((...(((..((((.((....)).))))...))).....))).)))))................((((((.(((.....))).))))))))))))........ ( -46.90) >DroSec_CAF1 15096 120 + 1 GGAGCGCAAGGCCAUUGGUGAGGGUGACCGCCAGACGUCCAGCGGCAAACCGGUGAGCCUGUGGCAGGUUAUCAAGAAUCCGGCAAUGAUCAUGUUGAUGAUUGCCGCGUCCAUCCGUCA (((.(((..((...(((((((((....))((((.(.(..((.(((....))).))..).).))))...)))))))....))((((((.(((.....))).))))))))))))........ ( -50.30) >DroEre_CAF1 15330 120 + 1 GGAGCGCAAGGCCAUCGGCGAGGGUGACCGGCAGACGUCCAGCGGCAAACCGGUGAGCCUGUGGCAGGUUAUCAAGAGUCCGGCGAUGAUCAUGCUGAUGAUUGCCGCGUCCAUCCGUCA (((.(((...(((((.(((..((....))(((....)))((.(((....))).)).))).)))))................((((((.(((.....))).))))))))))))........ ( -47.70) >DroYak_CAF1 14787 120 + 1 GGAGCGCAAGGCCAUCGGUGAGGGUGACCGCCAGACGUCCAGCGGCAAACCGGUGAGCCUGUGGCAGGUUAUCAAGAGUCCGGCAAUGAUCAUGCUGAUGAUUGCCGCGUCCAUCCGUCA (((((((.(((((((((((..((....))(((...........)))..))))))).))))...))................((((((.(((.....))).)))))))).)))........ ( -49.30) >consensus GGAGCGCAAGGCCAUCGGUGAGGGUGACCGCCAGACGUCCAGCGGCAAACCGGUGAGCCUGUGGCAGGUUAUCAAGAAUCCGGCAAUGAUCAUGCUGAUGAUUGCCGCGUCCAUCCGUCA (((.(((.........(((...(((((((((((.(.(..((.(((....))).))..).).)))).)))))))....).))((((((.(((.....))).))))))))))))........ (-43.71 = -43.65 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:57 2006