Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,595,691 – 6,595,793 |
Length | 102 |
Max. P | 0.908439 |
Location | 6,595,691 – 6,595,793 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.51 |
Mean single sequence MFE | -31.93 |
Consensus MFE | -19.62 |
Energy contribution | -20.75 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.15 |
Mean z-score | -2.28 |
Structure conservation index | 0.61 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.908439 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6595691 102 + 22224390 UU--------CAGUUGGCGUCGC-------CAGCACUUAGCACCUGGCUCA---UAAUGACCAUAUGCAAAUCGAAAAUCACAUGGAUUCUCUUGGCACCCAGCGACUCCUAACUGACCA .(--------(((((((.(((((-------..((.....(((..(((.((.---....)))))..))).....((.((((.....)))).))...)).....))))).)).))))))... ( -28.70) >DroSec_CAF1 11180 102 + 1 UU--------CAGUUGGCGUCGC-------UAGCACUUAGCACCUGGCCCA---UAAUGGCCAUAGGCAAAUCGUGAAUCACAUGGAUUCUCUUGGCACCCAGCGACUGCUAACUGACCA .(--------(((((((((((((-------(.((.....((...(((((..---....)))))...)).....(.(((((.....))))).)...))....)))))).)))))))))... ( -39.60) >DroEre_CAF1 11309 110 + 1 UUCAUUUCCUCAGGUGGCGUCGGUAGCACUUGGCACUUAGCACCUGGCCCA---CAAUGGCCAUAUGCAAAU-------CACAUGGAUUCUCUUGGCACCCGGCGGCUGCUAACUGACCA .........(((((..(((((((..((............(((..(((((..---....)))))..))).(((-------(.....))))......))..))))).))..)...))))... ( -32.20) >DroYak_CAF1 10535 98 + 1 UU--------CAGGUGGCGUCGC-------UGGCACUUAGCACCUCGCUCAUUAUAAUGGCCAUAUGCAAAUC----AUCACAUGGAUUCUCUUGGCACCCAGCGG---CUAACUGACCA .(--------(((.((((..(((-------(((.....(((.....)))..........((((...(..((((----........))))..).))))..)))))))---))).))))... ( -27.20) >consensus UU________CAGGUGGCGUCGC_______UAGCACUUAGCACCUGGCCCA___UAAUGGCCAUAUGCAAAUC____AUCACAUGGAUUCUCUUGGCACCCAGCGACUGCUAACUGACCA ..........(((((((((((((................(((..(((.(((......))))))..)))...............(((..((....))...)))))))).)))))))).... (-19.62 = -20.75 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:54 2006