Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,593,697 – 6,593,810 |
Length | 113 |
Max. P | 0.678005 |
Location | 6,593,697 – 6,593,810 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.18 |
Mean single sequence MFE | -26.82 |
Consensus MFE | -19.70 |
Energy contribution | -20.22 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.11 |
Mean z-score | -1.44 |
Structure conservation index | 0.73 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678005 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6593697 113 - 22224390 ACACCAACUGAGUUGCGUCAAUAUUAUAUGUAGCUCAAACAG-------ACACAGACUCUUAGUGGUUUGCGCUGUAAACCGAAGUGCCAUUGGCUAUUUCAUCCGCCUUCACUCGGAAU ........((((((((((.........)))))))))).((((-------.(.((((((......)))))).)))))...((((.(((.....(((..........)))..)))))))... ( -30.70) >DroSec_CAF1 9304 94 - 1 ACAGCAACUGAGUUGCGUCAAUAUUAUAUGUAGCUCAAACAG-------ACACAGACUCUUAAUGGUUUGCGCUGUAAACCGAAGUGCCAUUGGCUAUUUC------------------- (((((...((((((((((.........)))))))))).....-------...((((((......)))))).))))).....((((((((...))).)))))------------------- ( -26.10) >DroSim_CAF1 6107 94 - 1 ACAGCACCUGAGUUGCGUCAAUAUUAUAUGUAGCUCCAACAG-------ACACAGACUCUUAAUGGUUUGCGCUGUAAACCGAAGUGCCAUUGGCUAUUUC------------------- (((((....(((((((((.........)))))))))......-------...((((((......)))))).))))).....((((((((...))).)))))------------------- ( -24.40) >DroEre_CAF1 9462 117 - 1 ACAGCAACUGAGUUGCGUCAAUAUUA--UGUAGUUCAAACAGACUCCAGACACAGACUCCUAAUGGCUUGCGUUGUAAGCCAAAGUGCCAUUGGCCAUUUC-UCCCCUUCCCUUCGCCGU ...(((((...)))))((((((....--((.((((......)))).))(.(((((....))..((((((((...))))))))..))).)))))))......-.................. ( -23.70) >DroYak_CAF1 8647 106 - 1 ACAGCAACCGAGUUGCGUCAAUAUUA--UGUGGCUCAAA-----------CACAGACUCUUAAUGGUUUGCGUUGUAGAGCGAAGUGCCAUUGGCUAUUUC-UCCGCUUCCCAUCGGCAU ...(((((...)))))(((.......--.(((((((.((-----------(.((((((......)))))).)))...))))((((((((...))).)))))-..)))........))).. ( -29.19) >consensus ACAGCAACUGAGUUGCGUCAAUAUUAUAUGUAGCUCAAACAG_______ACACAGACUCUUAAUGGUUUGCGCUGUAAACCGAAGUGCCAUUGGCUAUUUC_UCC_C_U_C__UCG___U (((((....(((((((((.........)))))))))................((((((......)))))).))))).....((((((((...))).)))))................... (-19.70 = -20.22 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:45 2006