Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,586,507 – 6,586,610 |
Length | 103 |
Max. P | 0.738330 |
Location | 6,586,507 – 6,586,610 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 76.70 |
Mean single sequence MFE | -32.40 |
Consensus MFE | -20.38 |
Energy contribution | -20.50 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.16 |
Mean z-score | -1.69 |
Structure conservation index | 0.63 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.738330 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6586507 103 + 22224390 AUCGAUAAGUUAUCGCAAUGGUUCGCGCACGUACUAACCAAUGUGUAUUGUGUCUCCGCUAAC--------------UAAGGAUGGUGUAUUGGCUUAAUGCCAAUGCACACUGGA-A ...((((...((.((((.(((((.((....))...))))).))))))...))))(((......--------------...)))..((((((((((.....))))))))))......-. ( -30.40) >DroSim_CAF1 301 104 + 1 AUCAAUAAGUUCUCGGAAUGGUUCGCGCACGUGCUAACGCUUGCGUAUGGUGUCUCCGCUAAC--------------UAAGGAUGGUGUAUUGGCUUAAUGCCAAUGCACACUGGAAA (((....((((..(((((((.(..(((((...((....)).)))))..).))).))))..)))--------------)...))).((((((((((.....))))))))))........ ( -35.40) >DroYak_CAF1 1145 115 + 1 AUCGAUAAGUUAUCGCAAUGGUUCGCGCACGAGCUGG--AUAGUGUAAGAUGUCCCCGCUAACUUCGAAGUACUAGCUAAGGUUCGUGUAUUGGCUGAAUGUUAAUGCACGCUGAA-A .((((..(((((..((...((((((....))))))((--(((........)))))..)))))))))))................(((((((((((.....))))))))))).....-. ( -31.40) >consensus AUCGAUAAGUUAUCGCAAUGGUUCGCGCACGUGCUAAC_AUUGUGUAUGGUGUCUCCGCUAAC______________UAAGGAUGGUGUAUUGGCUUAAUGCCAAUGCACACUGGA_A .......(((........((((....((((((((..........)))).))))....))))........................((((((((((.....)))))))))))))..... (-20.38 = -20.50 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:32 2006