Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 837,877 – 837,991 |
Length | 114 |
Max. P | 0.500000 |
Location | 837,877 – 837,991 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 83.33 |
Mean single sequence MFE | -37.83 |
Consensus MFE | -25.46 |
Energy contribution | -26.65 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.07 |
Mean z-score | -1.51 |
Structure conservation index | 0.67 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 837877 114 - 22224390 AAAGGGGAUUGAGUCCUUUUUGGGGCAAUACCUAGUGAGCAAGGGAGUAAUGCGUAAUGAAAGUGCAAUUGCUGCCGAAGCUGCAGCGGCUGGUGGCAACAGUUCGCAGCGCAA (((((((((...)))))))))(((......))).....((..((.(((((((((.........))).)))))).))...(((((...(((((.......))))).))))))).. ( -35.70) >DroSec_CAF1 38726 114 - 1 AAAGGGGAUUGAGUCCUUUUUGGGGCAACACCUAGUGAGCAGGGGAGUUAUGCGUAAUGAAAGUGCAGUCGCUGCCGGAGCUGCAGCGACUGGCGGCAACAGUUCGCAGCGCAA .........(((.(((((((((((......))))).....)))))).)))(((((..((((.((.((((((((((.......))))))))))))(....)..))))..))))). ( -40.50) >DroSim_CAF1 34973 114 - 1 AAAGGGGAUUGAGUCCUUUUUGGGGCAACACCUAGUGAGCAGGGGAGUUAUGCGUAAUGAAAGUGCAGUCGCUGCCGGAGCUGCAGCGGCUGGCGGCAACAGUUCGCAGCGCAA .........(((.(((((((((((......))))).....)))))).)))(((((..((((.((.((((((((((.......))))))))))))(....)..))))..))))). ( -39.90) >DroEre_CAF1 38234 95 - 1 AAAGGGUAUUGAGUCCU---UGGGGGAGCACCUAGUGAGCAGGGUAGUAAUGCGUAAUGAAAGUGCAGCUGCAGCU----------------GCAGCUGCAGUUCCCAGCGCAA .(((((.......))))---)..((((((.(((.(....))))(((....)))..........(((((((((....----------------)))))))))))))))....... ( -35.20) >consensus AAAGGGGAUUGAGUCCUUUUUGGGGCAACACCUAGUGAGCAGGGGAGUAAUGCGUAAUGAAAGUGCAGUCGCUGCCGGAGCUGCAGCGGCUGGCGGCAACAGUUCGCAGCGCAA ...(((......(((((....)))))....))).((((((..........((((.........))))((.((((((((.((....))..)))))))).)).))))))....... (-25.46 = -26.65 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:54 2006