Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,582,657 – 6,582,777 |
Length | 120 |
Max. P | 0.523219 |
Location | 6,582,657 – 6,582,777 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.88 |
Mean single sequence MFE | -23.31 |
Consensus MFE | -21.32 |
Energy contribution | -21.52 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.12 |
Structure conservation index | 0.91 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523219 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6582657 120 - 22224390 CAGCGGCGCAUUUCUUAUGACAGAUCGCUAUAACACAAAAUAAAAUGCAAUCGCAGGGAAAUUACAAUUUAAUCAAAAUAUUUGCUCACAGAUAAGACAAGAGAAACGUGUCGGCAUUUU ...((((((.((((((.((...(((.((..................)).)))..........................((((((....))))))...)).)))))).))))))....... ( -20.77) >DroSec_CAF1 26961 118 - 1 -AGCGGCGCAUUUCUUAUGACAGAUCGCUGUAACAGA-AAUAAAAUGCAAUCGCAGGGAAAUUAAAAUUUAAUCAAAAUAUUUGCUUACAGAUAAGACAAGAGAAACGUGUCGCCAUUUU -.(((((((.((((((.((........((((((((((-.......(((....)))...........((((.....)))).)))).))))))......)).)))))).)))))))...... ( -26.14) >DroSim_CAF1 39060 118 - 1 -AGCGGCGCAUUUCUUAUGACAGAUCGCUGUAACAGA-AAUAAAAUGCAAUCGCAGGGAAAUUAAAAUUUAAUCAAAAUAUUUGCUCACAGAUAAGACAAGAGAAACGUGUCGGCAUUUU -..((((((.((((((.((.....((.((((......-..............)))).))...................((((((....))))))...)).)))))).))))))....... ( -22.65) >DroEre_CAF1 26360 118 - 1 -AGCGGCGCAUUUCUUAUGACAGAUCGCUGUAACAGA-AAUAAAAUGCAAGCGCAAGGAAAUUACAAUUUAAUCAAAAUAUUUGCUCUCAGAUAAGACAAGAGAAACGUGUCGGCAUUUU -..((((((.((((((.((.(..(((((((((.....-.......))).)))(((((.......................))))).....)))..).)).)))))).))))))....... ( -22.60) >DroYak_CAF1 37735 118 - 1 -AGCGGCGCAUUUCUUAUGACAGAUCGCUGUAACAGA-AAUAAAAUGCAACCGCAGGCAAAUUACAAUUUAAUCAAAAUAUUUGCUCACAGAUAAGACAAGAGAAACGUGUCGGCAUUUU -..((((((.((((((.((........((((......-.......(((....)))(((((((.................))))))).))))......)).)))))).))))))....... ( -24.37) >consensus _AGCGGCGCAUUUCUUAUGACAGAUCGCUGUAACAGA_AAUAAAAUGCAAUCGCAGGGAAAUUACAAUUUAAUCAAAAUAUUUGCUCACAGAUAAGACAAGAGAAACGUGUCGGCAUUUU ..(((((((.((((((.((((((....))))..............(((....))).......................((((((....))))))...)).)))))).)))))).)..... (-21.32 = -21.52 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:29 2006