Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,577,577 – 6,577,697 |
Length | 120 |
Max. P | 0.965482 |
Location | 6,577,577 – 6,577,697 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.04 |
Mean single sequence MFE | -22.77 |
Consensus MFE | -16.10 |
Energy contribution | -18.23 |
Covariance contribution | 2.12 |
Combinations/Pair | 1.14 |
Mean z-score | -2.05 |
Structure conservation index | 0.71 |
SVM decision value | 1.58 |
SVM RNA-class probability | 0.965482 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6577577 120 - 22224390 UAAUGUUGCAAAUUCAAUGUUGCAUAUUCAAUGUUGCAUAUUCAAUGUUGCAUAUUCAAUGUUGCAUAUUUAAUGUUGCAAAUUCAAUGUUGCAUAUUCAAUGUUGCAUAUUCAAUGUUG ..............((((((((.((((.((((((((.((((.((((((((.((...((((((((......))))))))...)).)))))))).)))).)))))))).)))).)))))))) ( -27.70) >DroSim_CAF1 33940 105 - 1 ---------------AAUGUUGCAUAUUCAAUGUUGCAUAUUCAAUGUUGCAAGUUCAAUGUUGCAAGUUCAAUGUUGCACAUUCAAUGUUGCAUAUUAAAUGUUGAUUAUUCAAUGUUG ---------------(((((((.(((.((((((((..((((.((((((((...((.((((((((......)))))))).))...)))))))).))))..)))))))).))).))))))). ( -26.40) >DroEre_CAF1 21871 104 - 1 ---------C-------UAAUGCUAAUUCGAUGUUGCACAUUCAAUGUUGCACAUUCAAUGUUGCAAAUUUAAUAUUUUAAAUUCAAUGUUGCAAAUUCAAUGUUACAAGUUCAAUGUUG ---------.-------...........((((((((.((....(((((((......((((((((..(((((((....)))))))))))))))......)))))))....)).)))))))) ( -16.80) >DroYak_CAF1 32060 97 - 1 -----------------------ACUUUCAAUGUUGCAAAUUCAAUGUUGCACAUUCAAUGUUGCAUAUUCAAUGUUGCCAAUUCAAUGUUGCAUGUUCAAUGUUGCAAAUUCAAUGUUG -----------------------.....((((((((.((.((((((((((.((((.((((((((.((...((....))...)).)))))))).)))).)))))))).)).)))))))))) ( -20.20) >consensus _________________UGUUGCAUAUUCAAUGUUGCAUAUUCAAUGUUGCACAUUCAAUGUUGCAAAUUCAAUGUUGCAAAUUCAAUGUUGCAUAUUCAAUGUUGCAAAUUCAAUGUUG ............................((((((((.((((.((((((((.((((.((((((((...((((........)))).)))))))).)))).)))))))).)))).)))))))) (-16.10 = -18.23 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:21 2006