Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,575,854 – 6,575,970 |
Length | 116 |
Max. P | 0.596520 |
Location | 6,575,854 – 6,575,970 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 90.91 |
Mean single sequence MFE | -45.20 |
Consensus MFE | -33.42 |
Energy contribution | -33.80 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.07 |
Mean z-score | -1.78 |
Structure conservation index | 0.74 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.596520 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6575854 116 - 22224390 AACCGAGCCGAGUGCC-CCGAGAGUGGCAGGCGCACACACAGAUUGUGCGAUCGCGAAUGAGCGAAGAAGAGUCAGCAUCCCGAGAACGAUGCCGGAAAGGGGGCGUCUGGGUUU-CG ...((((((.((((((-((.....((((...((((((.......)))))).((((......))))......))))(((((........))))).......)))))).)).)).))-)) ( -43.90) >DroSec_CAF1 20597 117 - 1 AACCGAGCCGAGUGCCGCCGAGAGUGGCAGGCGCACACACAGAUUGUGCGAUCGCGAAUGAGCGAAGAAGAGUCAGCAUCCCGAUAACGAAGCCGAAAAGGGGGCGGCUGGGUUU-CG ((((.((((...((((((.....))))))((((((((.......)))))..((((......))))......))).((.((((.....((....))....)))))))))).)))).-.. ( -44.50) >DroSim_CAF1 32405 117 - 1 AACCGAGCCGAGUGCCCCCGAGAGUGGCAGGCGCGCACACAGAUUGUGCGAUCGCGAAUGAGCGAAGAAGAGUCAGCAUCCCGAGAACGAAGCCGAAAAGGGGGCGGCUGGGUUU-CG ((((.((((....((((((.....((((.(((.((((((.....)))))).((((......))))......))).......((....))..))))....)))))))))).)))).-.. ( -49.00) >DroEre_CAF1 20276 113 - 1 AAGCGAGCCGAGUGCC-CCGAGAGUGGCAGGC--ACACGGAGAUUGUGCGAUCGCGAAAGAGCGACGAAGAGGCAGCAUCCCGAGAACGAAUCCGUAAAAGGGGCGGCUGGGUUCG-- ...((((((.((((((-((....(((.....)--))(((((..((((.((.((((......))))))....((.......))....)))).)))))....))))).))).))))))-- ( -43.40) >consensus AACCGAGCCGAGUGCC_CCGAGAGUGGCAGGCGCACACACAGAUUGUGCGAUCGCGAAUGAGCGAAGAAGAGUCAGCAUCCCGAGAACGAAGCCGAAAAGGGGGCGGCUGGGUUU_CG ....(((((.((((((.((.....((((...((((((.......)))))).((((......))))..........................)))).....)))))).)).)))))... (-33.42 = -33.80 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:20 2006