Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,567,328 – 6,567,448 |
Length | 120 |
Max. P | 0.837850 |
Location | 6,567,328 – 6,567,448 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.75 |
Mean single sequence MFE | -32.92 |
Consensus MFE | -31.16 |
Energy contribution | -30.72 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.09 |
Mean z-score | -1.23 |
Structure conservation index | 0.95 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.837850 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6567328 120 - 22224390 ACUGCGUUUCACUAUCGUUUCGAUUACGAUCAACUUUACAUUCCACAUUGGCUACUAUGGCCUGUUGAUGUGGUUCCCGGAGCUCUUCAAUCGCUUCGAGGAGUACGAGAAGGCAUUCCC ..(((.((((...(((((.......)))))......(((...(((((((((((.....))))....))))))).(((((((((.........)))))).)))))).))))..)))..... ( -33.40) >DroSec_CAF1 12290 120 - 1 ACUGCGUUUCACCAUCGUUUCGAUUACGAUCAACUUUACAUUCCACAUUGGAUACUACGGCCUGUUGAUGUGGUUCCCGGAGCUCUUCAAUCGUUUCGAGGAAUACGAGAAGGCAUUCCC ..(((.((((...(((((.......)))))............((((((..(...(....)....)..))))))((((((((((.........)))))).))))...))))..)))..... ( -28.80) >DroSim_CAF1 22816 120 - 1 ACUGCGUUUCACCAUCGUUUCGAUUACGAUCAACUUUACAUUCCACAUUGGCUACUACGGCCUGUUGAUGUGGUUCCCGGAGCUCUUCAAUCGUUUCGAGGAAUACGAGAAGGCAUUCCC ..(((.((((...(((((.......)))))............((((((..((..(....)...))..))))))((((((((((.........)))))).))))...))))..)))..... ( -32.00) >DroEre_CAF1 11916 120 - 1 AUUGCGCUUCACCAUCGUCUCGAUCACGAUUAACUUUACAUUCCACAUUGGCUACUACGGCCUGUUGAUGUGGUUCCCGGAGCUCUUCAAUCGCUUCGAGGAGUACGAGAAGGCAUUCCC ..(((.((((...(((((.......)))))......(((...((((((..((..(....)...))..)))))).(((((((((.........)))))).))))))...)))))))..... ( -36.60) >DroYak_CAF1 21734 120 - 1 ACUGCGAUUCACCAUCGUCUCGAUCACGAUUAACUUUACAUUCCACAUUGGCUAUUAUGGCCUGUUGAUGUGGUUCCCGGAGCUCUUUAAUCGCUUCGAGGAGUACGAGAAGGCAUUCCC ..((((((.....))).(((((....................(((((((((((.....))))....)))))))((((((((((.........)))))).))))..)))))..)))..... ( -33.80) >consensus ACUGCGUUUCACCAUCGUUUCGAUUACGAUCAACUUUACAUUCCACAUUGGCUACUACGGCCUGUUGAUGUGGUUCCCGGAGCUCUUCAAUCGCUUCGAGGAGUACGAGAAGGCAUUCCC ..(((........(((((.......)))))...((((.(...((((((..((..(....)...))..))))))((((((((((.........)))))).))))...).)))))))..... (-31.16 = -30.72 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:56 2006