Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,566,074 – 6,566,273 |
Length | 199 |
Max. P | 0.842338 |
Location | 6,566,074 – 6,566,171 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 97.10 |
Mean single sequence MFE | -20.98 |
Consensus MFE | -17.58 |
Energy contribution | -19.18 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.69 |
Structure conservation index | 0.84 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.769550 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6566074 97 - 22224390 CGAGAAGAUAUAGCAGGUAGGAUCGAUAGCAAUCGAUGUAUAUGUAUUGUAUUGUACGAUAUGUAGAGAAUAAUAUAUAUAUAUUUGGCAAGCGCCG .....................((((((....))))))(((((((((((((.((.(((.....))).)).)))))))))))))....(((....))). ( -22.20) >DroSec_CAF1 11060 97 - 1 CGAGAAGAUAUAGCAGGUAGGAUCGAUAGCAAUCGAUGUAUAUGUAUUGUAUUGUACGAUAUGUAGAGAAUAAUAUAUAUAUAUUUAGCAAGCGCCG ...............(((...((((((....))))))(((((((((((((.((.(((.....))).)).)))))))))))))...........))). ( -21.50) >DroSim_CAF1 21583 97 - 1 CGAGAAGAUAUAGCAGGUAGGAUCGAUAGCAAUCGAUGUAUAUGUAUUGUAUUGUACGAUAUGUAGAGAAUAAUAUAUAUAUAUUUGGCAAGCGCCG .....................((((((....))))))(((((((((((((.((.(((.....))).)).)))))))))))))....(((....))). ( -22.20) >DroEre_CAF1 10690 93 - 1 CGAGAAGAUAUAGCAGGUAGGAUCGAUAGCAAUCGAUGUAUAUGUAUUGUAUUGUACGAUAUGUAGAGAAUAAUAU----AUAUUUGGCAAGCGCCG .....(((((((.......(.((((((....)))))).).(((((((((((...)))))))))))..........)----))))))(((....))). ( -19.50) >DroYak_CAF1 20507 93 - 1 CGAGAAGAUAUAGCAGGUAGGAUCGAUAGCAAUCGAUGUAUAUGUAUUGUAUUGUACGAUAUGUAGAGAAUAAUAU----AUAUUUGGCAAGCGCCG .....(((((((.......(.((((((....)))))).).(((((((((((...)))))))))))..........)----))))))(((....))). ( -19.50) >consensus CGAGAAGAUAUAGCAGGUAGGAUCGAUAGCAAUCGAUGUAUAUGUAUUGUAUUGUACGAUAUGUAGAGAAUAAUAUAUAUAUAUUUGGCAAGCGCCG ...............(((...((((((....))))))(((((((((((((.((.(((.....))).)).)))))))))))))...........))). (-17.58 = -19.18 + 1.60)
Location | 6,566,171 – 6,566,273 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 77.52 |
Mean single sequence MFE | -22.05 |
Consensus MFE | -14.96 |
Energy contribution | -15.90 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.08 |
Mean z-score | -1.82 |
Structure conservation index | 0.68 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.842338 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6566171 102 + 22224390 CUGGCUUGGGGUUUUCUUUGCUUAUCAUAAUUGGGCGAAAGAAUGCCAAUCCGCAUUCCAAAAUGGUUGUAUGUAUUAGUUUCCAAAUUUUCUUA--------------UUUUCCU ..((.((((.(((((.((((((((.......))))))))))))).)))).))((((.((.....))....)))).....................--------------....... ( -21.40) >DroSec_CAF1 11157 97 + 1 CUGGCUUGGGGUUUUCUUUGCUUAUCAUAAUUGGGCGAAGGAAUGUCAAU-CGCAUCCCAAAAUGGUU----GUGUUCUUUUCAUAAUUUUCUUU--------------CUUUCCU ..((.(((((((((((((((((((.......)))))))))))).((....-.)))))))))...((((----(((.......)))))))......--------------....)). ( -21.90) >DroSim_CAF1 21680 99 + 1 CUGGCUUGGGGUUUUCUUUGCUUAUCAUAAUUGGGCGAAGGAAUGCCAAU-CGCAUCCCAAAAUGGUU--AUGUGUUCUUUUCAUAAUUUUCUUC--------------CUUUCCU ..((...(((((((((((((((((.......)))))))))))).)))...-(((((.((.....))..--)))))...................)--------------)...)). ( -23.50) >DroEre_CAF1 10783 106 + 1 CUGGCUUGGGGUUUUCUUUGCUUAUCAUA-UUGGGCGAUAGAAUGC-------CAUCCAAAAAUGGGC--AAGUAUUCUCAUUAUAUUUUCCUUCUUUUUCCCUUUUCUUUUUCUU ..((..(((.(((((..(((((((.....-.))))))).))))).)-------)).))((((..(((.--((((((.......)))))).)))..))))................. ( -21.40) >consensus CUGGCUUGGGGUUUUCUUUGCUUAUCAUAAUUGGGCGAAAGAAUGCCAAU_CGCAUCCCAAAAUGGUU__AUGUAUUCUUUUCAUAAUUUUCUUC______________CUUUCCU (((..(((((((((((((((((((.......)))))))))))).((......)))))))))..))).................................................. (-14.96 = -15.90 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:42 2006