Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,565,508 – 6,565,600 |
Length | 92 |
Max. P | 0.779181 |
Location | 6,565,508 – 6,565,600 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 92.55 |
Mean single sequence MFE | -19.14 |
Consensus MFE | -18.28 |
Energy contribution | -18.04 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -1.19 |
Structure conservation index | 0.96 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.779181 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6565508 92 + 22224390 CGUCAAUAUUUCUCAUUCAUUGAGCAAAUAAACAUUAGCCCGGUCGCGUGUUCCAUUCCAUUCGAAAAAUUCGCAGAUGUGCGACUGAUUAA ......(((((((((.....)))).)))))..........((((((((..((..........(((.....)))..))..))))))))..... ( -18.70) >DroSec_CAF1 10487 92 + 1 CGUCAAUAUUUCUCAUUCAUUGAGCAAAUAAACAUUAGCCCGGUCGCGUGUUCCAUUCCAUUCGAAAAAUUCGCAGAUGUGCGACUGAUUAA ......(((((((((.....)))).)))))..........((((((((..((..........(((.....)))..))..))))))))..... ( -18.70) >DroSim_CAF1 21013 92 + 1 CGUCAAUAUUUCUCAUUCAUUGAGCAAAUAAACAUUAGCCCGGUCGCGUGUUCCAUUCCAUUCGAAAAAUUCGCAGAUGUGCGACUGAUUAA ......(((((((((.....)))).)))))..........((((((((..((..........(((.....)))..))..))))))))..... ( -18.70) >DroEre_CAF1 10176 85 + 1 CCUCAAUAUUUCUCAUUCAUUGGGCAAAUAAACAGAAGCCCGGUCGCGUGUUCCAUUC-----G--AAAUUCGCAGAUGUGCGACUGAUUAA ......(((((((((.....)))).)))))..........((((((((..((.....(-----(--.....))..))..))))))))..... ( -19.20) >DroYak_CAF1 19942 85 + 1 CGUCAAUAUUUCUCAUUCAUUGGGCAAAUAAACAUUAAUCCGGUCGCGUGUUCCAUUC-----G--AAAUUCGCAGAUGUGCGACUGAUUAA ......(((((((((.....)))).)))))....((((((.(((((((..((.....(-----(--.....))..))..))))))))))))) ( -20.40) >consensus CGUCAAUAUUUCUCAUUCAUUGAGCAAAUAAACAUUAGCCCGGUCGCGUGUUCCAUUCCAUUCGAAAAAUUCGCAGAUGUGCGACUGAUUAA ......(((((((((.....)))).)))))..........((((((((..((.......................))..))))))))..... (-18.28 = -18.04 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:41 2006