Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,554,826 – 6,554,946 |
Length | 120 |
Max. P | 0.710530 |
Location | 6,554,826 – 6,554,946 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.22 |
Mean single sequence MFE | -44.53 |
Consensus MFE | -42.03 |
Energy contribution | -42.37 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.79 |
Structure conservation index | 0.94 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.710530 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6554826 120 - 22224390 UUGGAACGGAGGGAACUGGAACUGGAAUCAAAGGAGAUGGAGCUGCUGCAGGAGUAACAGGAGUAACCGCUGGCCAUCAACUGCAUGCCUUCCAAUGGUUCUGGGUCCUUCGGCUUCCAC .((((((.((((((.(..(((((((((.((.((..((((((((((((.(.(......).).))))...)))..)))))..))...))..))))...)))))..).)))))).).))))). ( -41.50) >DroSim_CAF1 10090 120 - 1 UUGGAACGGAGGGAACUGGAACUGGAAUCGAAGGAGAUGGAGCUGCUGCAGGAGUAACAGGAGUAACCGCUGGCCAUCAACUGCAUGCCUUCCAAUGGUUCUGGGUCCUUCUGCUUCCAC .(((((((((((((.(..(((((....((....))..(((((..(((((((((....((((......).)))....))..))))).)).)))))..)))))..).)))))))).))))). ( -45.60) >DroYak_CAF1 9976 120 - 1 GUGGAACGGAGGGAACUGGAACUGGAAUCGAAGGAGAUGGAGCUGCUGCAGGAGUAACAGGAGUAACCGCUGGCCAUCAACUGCAUGCCUUCCAAUGGUUCGGGGUCCUUCUGUUUCCAC ((((((((((((((.((.(((((....((....))..(((((..(((((((((....((((......).)))....))..))))).)).)))))..))))).)).)))))))).)))))) ( -46.50) >consensus UUGGAACGGAGGGAACUGGAACUGGAAUCGAAGGAGAUGGAGCUGCUGCAGGAGUAACAGGAGUAACCGCUGGCCAUCAACUGCAUGCCUUCCAAUGGUUCUGGGUCCUUCUGCUUCCAC .(((((((((((((.(..(((((....((....))..(((((..(((((((((....((((......).)))....))..))))).)).)))))..)))))..).)))))))).))))). (-42.03 = -42.37 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:37 2006