Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,549,180 – 6,549,300 |
Length | 120 |
Max. P | 0.813106 |
Location | 6,549,180 – 6,549,300 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.44 |
Mean single sequence MFE | -26.71 |
Consensus MFE | -26.63 |
Energy contribution | -26.63 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.76 |
Structure conservation index | 1.00 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.813106 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6549180 120 + 22224390 UUGGAGGAUUUCCACUGCGACUCCCCUUGGUACGAACAAAUGAGGUCAAAAUAAUAGUAACCCUGUUCUCAUUGUCGAUCCAAUUUGCUGAAUUUAUAUAUAUUUAAAUUCUUGCAAGAA ..((((..............))))..((((..(((...((((((..((...............))..)))))).)))..))))(((((.(((((((........)))))))..))))).. ( -26.20) >DroSim_CAF1 4183 120 + 1 UUGGAGGAUUUCCACUGCGAUUCCCCUUGGUACGAACAAAUGAGGUCAAAAUAAUAGUAACCCUGUUCUCAUUGUCGAUCCAAUUUGCUGAAUUUAUAUAUAUUUAAAUUCUUGCAAGAA ..((.(((..((......)).)))))((((..(((...((((((..((...............))..)))))).)))..))))(((((.(((((((........)))))))..))))).. ( -26.96) >DroYak_CAF1 4196 120 + 1 UUGGAGGAUUUCCACUGCGAUUCCCCUUGGUACGAACAAAUGAGGUCAAAAUAAUAGUAACCCUGUUCUCAUUGUCGAUCCAAUUUGCUGAAUUUAUAUAUAUUUAAAUUCUUGCAAGAA ..((.(((..((......)).)))))((((..(((...((((((..((...............))..)))))).)))..))))(((((.(((((((........)))))))..))))).. ( -26.96) >consensus UUGGAGGAUUUCCACUGCGAUUCCCCUUGGUACGAACAAAUGAGGUCAAAAUAAUAGUAACCCUGUUCUCAUUGUCGAUCCAAUUUGCUGAAUUUAUAUAUAUUUAAAUUCUUGCAAGAA ..((.(((..((......)).)))))((((..(((...((((((..((...............))..)))))).)))..))))(((((.(((((((........)))))))..))))).. (-26.63 = -26.63 + -0.00)
Location | 6,549,180 – 6,549,300 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 99.44 |
Mean single sequence MFE | -26.33 |
Consensus MFE | -26.33 |
Energy contribution | -26.33 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.31 |
Structure conservation index | 1.00 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516395 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6549180 120 - 22224390 UUCUUGCAAGAAUUUAAAUAUAUAUAAAUUCAGCAAAUUGGAUCGACAAUGAGAACAGGGUUACUAUUAUUUUGACCUCAUUUGUUCGUACCAAGGGGAGUCGCAGUGGAAAUCCUCCAA ...((((..(((((((........))))))).)))).((((((.(((((((((..((((((.......))))))..)))).))))).)).))))(((((.((......))..))).)).. ( -26.80) >DroSim_CAF1 4183 120 - 1 UUCUUGCAAGAAUUUAAAUAUAUAUAAAUUCAGCAAAUUGGAUCGACAAUGAGAACAGGGUUACUAUUAUUUUGACCUCAUUUGUUCGUACCAAGGGGAAUCGCAGUGGAAAUCCUCCAA ...((((..(((((((........))))))).)))).((((((.(((((((((..((((((.......))))))..)))).))))).)).))))(((((.((......))..))).)).. ( -26.10) >DroYak_CAF1 4196 120 - 1 UUCUUGCAAGAAUUUAAAUAUAUAUAAAUUCAGCAAAUUGGAUCGACAAUGAGAACAGGGUUACUAUUAUUUUGACCUCAUUUGUUCGUACCAAGGGGAAUCGCAGUGGAAAUCCUCCAA ...((((..(((((((........))))))).)))).((((((.(((((((((..((((((.......))))))..)))).))))).)).))))(((((.((......))..))).)).. ( -26.10) >consensus UUCUUGCAAGAAUUUAAAUAUAUAUAAAUUCAGCAAAUUGGAUCGACAAUGAGAACAGGGUUACUAUUAUUUUGACCUCAUUUGUUCGUACCAAGGGGAAUCGCAGUGGAAAUCCUCCAA ...((((..(((((((........))))))).)))).((((((.(((((((((..((((((.......))))))..)))).))))).)).))))(((((.((......))..))).)).. (-26.33 = -26.33 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:30 2006