Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,548,239 – 6,548,359 |
Length | 120 |
Max. P | 0.547470 |
Location | 6,548,239 – 6,548,359 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.44 |
Mean single sequence MFE | -25.30 |
Consensus MFE | -18.21 |
Energy contribution | -19.10 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.09 |
Mean z-score | -2.32 |
Structure conservation index | 0.72 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.547470 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6548239 120 + 22224390 AGAAAACACAACAAAUGCAGCCAAAUCGAAAGACAAAAGCAAAAGGCAAAUAAAGCGCAAAGACAGCGCAAAGUCAAAUGUCGUUUAAGUUCCAAGACUUUUUGCUUUGUUUGUUUUUGC .(((((((.((((((.((((((...((....))(....).....))).......((((.......))))((((((......(......)......)))))).)))))))))))))))).. ( -27.10) >DroSim_CAF1 3295 109 + 1 AGAAAACACAACAAAUGCAGCCAAAUCAAAAGACAAAAGCAAAAGGCAAAUAAAGCGC-----------AAAGUCAAAUGUCGUUUAAGUUCCAAGACUUUUUGCUUUGUUUGUUUUUGC ......................................(((((((.(((((((((((.-----------((((((......(......)......)))))).)))))))))))))))))) ( -24.30) >DroYak_CAF1 3256 120 + 1 AGAAAACACAAAAAAUGCAGCCAAAUCGAAAGACAAAAGCAAAUGGCAAAUACAACGCAAAGGCAGUGCAAAGUCAAAUGUCGUUGAAGUUCCAAGUCUUUUUGCUUUGUUUGUUUUUGC ...................((((..((....))(....)....)))).........((((((((((.(((((((.(((.(.(.(((......)))).).))).))))))))))))))))) ( -24.50) >consensus AGAAAACACAACAAAUGCAGCCAAAUCGAAAGACAAAAGCAAAAGGCAAAUAAAGCGCAAAG_CAG_GCAAAGUCAAAUGUCGUUUAAGUUCCAAGACUUUUUGCUUUGUUUGUUUUUGC .........................((....))((((((((((.((((((..(((((((..(((........)))...)).)))))(((((....)))))))))))...)))))))))). (-18.21 = -19.10 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:28 2006