Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,542,465 – 6,542,555 |
Length | 90 |
Max. P | 0.976603 |
Location | 6,542,465 – 6,542,555 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 93.55 |
Mean single sequence MFE | -30.26 |
Consensus MFE | -27.74 |
Energy contribution | -27.42 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.09 |
Mean z-score | -1.60 |
Structure conservation index | 0.92 |
SVM decision value | 1.77 |
SVM RNA-class probability | 0.976603 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6542465 90 + 22224390 CAGCUUUUAGGGCUGCUCGGCCAAGCUGCUCUGCCGGAGAGCCAGCUCCAAAUGGGCGUAUUUGCCUGAAUCCAGGCUAACCGAUUAUAC (((((.....))))).((((((((((((((((.....)))).))))).....)))........(((((....)))))...))))...... ( -30.60) >DroSec_CAF1 26755 90 + 1 CAGCUUUUCCUGCUGCUCGGCCUAGCUGCUCUGCCGGAGAGCCAGCUCCAAAUGGGCGUCUUUGCCUAAAUCCAGGCUAACCGAUUAUAC ((((.......))))...((((((((((((((.....)))).))))).....((((((....)))))).....)))))............ ( -29.50) >DroSim_CAF1 19212 90 + 1 CAGCUUUUCCUGCUGCUCGGCCUAGCUGCUCUGCCGGAGAGCCAGCUCCAAAUGGGCGUCUUUGCCUUAAUCCAGGCUAACCGAUUAUAC ((((.......))))...((((((((((((((.....)))).)))))......(((((....)))))......)))))............ ( -27.70) >DroEre_CAF1 15317 89 + 1 CAGCUUUUCGUGCUGCUCGGCCCAGCUGCUCUGCCGGAGAGCCAGCUCCAAAUGGGCGUCUUUGCCUGAUGCCAGGCCAACCGA-UAUAC ((((.......))))...((((.(((((((((.....)))).))))).......((((((.......)))))).))))......-..... ( -33.10) >DroYak_CAF1 14905 89 + 1 CAGCUUUUCCUGCUGCUCGGCCUGGCUGCUCUGCCGGAGAGCCAGCUCCAAAUGGGCGUCUUUGCCUUAGUCCAGGCUAACCGA-UAUAC ((((.......))))...((((((((((.......((((......))))....(((((....)))))))).)))))))......-..... ( -30.40) >consensus CAGCUUUUCCUGCUGCUCGGCCUAGCUGCUCUGCCGGAGAGCCAGCUCCAAAUGGGCGUCUUUGCCUGAAUCCAGGCUAACCGAUUAUAC ((((.......))))...((((.(((((((((.....)))).)))))......(((((....))))).......))))............ (-27.74 = -27.42 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:27 2006