Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,540,876 – 6,540,974 |
Length | 98 |
Max. P | 0.871996 |
Location | 6,540,876 – 6,540,974 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 86.41 |
Mean single sequence MFE | -25.20 |
Consensus MFE | -23.45 |
Energy contribution | -23.23 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.11 |
Mean z-score | -1.63 |
Structure conservation index | 0.93 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.871996 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6540876 98 + 22224390 GCUGUGAUACUUAAAUGUACAACAAGCAUACGGAUGGCGAUCCUGAGAAUGGGACCCACCCUUCAGGUUCAUCGAGGACAUUCUGUCAGAUUUGAAGG (((((..(((......)))..)).)))....((.(((.(.((((......))))))))))((((((....(((...(((.....))).))))))))). ( -24.40) >DroSec_CAF1 25250 91 + 1 GUUGUUAUACUUAAAUGUACAGCAAACAUAAAAAUGGAGAUCCUGAGAAUGGGACCCACCCUUCAGGGUCAUCGAGGACAUACUGUCAGAU------- .(((((.(((......))).))))).............(((((((((...(((.....))))))))))))(((...(((.....))).)))------- ( -24.70) >DroSim_CAF1 17582 91 + 1 GUUGUUAUACUUAAAUGUACAGCAAACAUAAGAAUGGUGAUCCUGAGAACGGGACCCACCCUUCAGGGUCAUCGAGGACAUACUGUUAGAU------- .(((((.(((......))).))))).........(((((((((((((...(((.....))))))))))))))))..(((.....)))....------- ( -26.50) >consensus GUUGUUAUACUUAAAUGUACAGCAAACAUAAGAAUGGAGAUCCUGAGAAUGGGACCCACCCUUCAGGGUCAUCGAGGACAUACUGUCAGAU_______ ((((((.(((......))).))).)))...........(((((((((...(((.....))))))))))))(((...(((.....))).)))....... (-23.45 = -23.23 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:25 2006