Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,540,177 – 6,540,297 |
Length | 120 |
Max. P | 0.812737 |
Location | 6,540,177 – 6,540,297 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.58 |
Mean single sequence MFE | -26.80 |
Consensus MFE | -22.28 |
Energy contribution | -22.88 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.13 |
Mean z-score | -1.54 |
Structure conservation index | 0.83 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.812737 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6540177 120 + 22224390 AUUUAAUUUAAUUCAUCUUAUUUCAGUUGUUUUCAUUUCAACAAUCGUUCUGUUCACAGUAGGGAUGGUAAAAAGUAUCGAUACAUCGAUAGUUGAGCAGGCUGUCGAUUCAUUGGAAAA ............(((((((......((((.........)))).......(((....)))..))))))).........(((((..((((((((((.....))))))))))..))))).... ( -23.40) >DroSec_CAF1 24618 120 + 1 AUUUAAUUUAACUCAUCUUAUUUCAGUUGUUUUCAUUUCAACAAUCGUUCUGUUCACAGUAGGGAUGGUAAAAAGUAUCGAUACAUCGAUAGUCGAGCAGGCUGUGGAUGCAUUGGAAAA ......(((.((.((((((......((((.........)))).......(((....)))..)))))))).)))....(((((.((((.((((((.....)))))).)))).))))).... ( -26.40) >DroSim_CAF1 16938 119 + 1 AUUUAAUUUAACUCAUCUUAUUUCAGUUGUUUUCAUUUCAACAAUCGUUCUGUUCACAGUAGGGAUGGUUAAAAGUAUCGAUACAUCGAUAGUCGAGCAGGCUAUGGAUGCAUUG-AAAA ......((((((.((((((......((((.........)))).......(((....)))..))))))))))))....(((((.((((.((((((.....)))))).)))).))))-)... ( -31.20) >DroEre_CAF1 13273 120 + 1 AUUUAAUUUAAUUCAUCUUAUUUCAGUUGUUUUCAUUUCAACAAUCGUUCAGUUCACAGUAGGGAUGGUACAACUUAUCGAUACAUCGAUAGUUAAGCAGACUGUCGAUACAUUGGACAC .........................((((.........))))....(((((((.....(((..(((((......)))))..)))((((((((((.....))))))))))..))))))).. ( -25.10) >DroYak_CAF1 13112 120 + 1 AUUUAAUUUAAUUCAUUUUAUUUCAGUUGUUUUCAUUUCAACAAUCGUUCAGUUCACAGUAGGGAUGGUAAAACUUAUCGAUACAUCGAUAGUCAAGCCGACUGUCGAUGCAUUGGACAA .........................((((.........))))....(((((((.(...(((..(((((......)))))..)))((((((((((.....))))))))))).))))))).. ( -27.90) >consensus AUUUAAUUUAAUUCAUCUUAUUUCAGUUGUUUUCAUUUCAACAAUCGUUCUGUUCACAGUAGGGAUGGUAAAAAGUAUCGAUACAUCGAUAGUCGAGCAGGCUGUCGAUGCAUUGGAAAA ............(((((((......((((.........)))).......(((....)))..))))))).........(((((.(((((((((((.....))))))))))).))))).... (-22.28 = -22.88 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:23 2006