Locus 2434

Sequence ID X_DroMel_CAF1
Location 6,530,861 – 6,530,963
Length 102
Max. P 0.585504
window3956

overview

Window 6

Location 6,530,861 – 6,530,963
Length 102
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 80.10
Mean single sequence MFE -21.52
Consensus MFE -13.48
Energy contribution -14.15
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.53
Structure conservation index 0.63
SVM decision value 0.10
SVM RNA-class probability 0.585504
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6530861 102 + 22224390
AACUU-------GCAGACUUCUCCAGCGAAUUCAAACAUCAACAGCUCUGUGGACAGUUAUCCACUGGCACUCAAAAUGAUGUUCAACUACGACAUCCAGAGCAACGCU
.....-------((.((.(((......))).))...........((((((((((......))))).............((((((.......)))))).)))))...)). ( -21.70)
>DroSec_CAF1 4136 102 + 1
AACUU-------GCAGACUUCGCCAGCGAAUUCAAACAUCAACAGCUCUGUGGACAGCUAUCCACUGGCACUCAAAAUGAUGUUCAACUACGACAUCCAGAGCAACGCC
.....-------((.((.((((....)))).))...........((((((((((......))))).............((((((.......)))))).)))))...)). ( -24.50)
>DroEre_CAF1 4126 102 + 1
AACUU-------UCAGACUUCCCCAGCGAAUUCAAAAAACAACAGCUCUGUGGACACCUAUCCACUGGCUCUCAAAAUGAUGUUCAACUACGACAUCCAGAGCAACGCC
.....-------.............(((.....................(((((......)))))..(((((......((((((.......)))))).)))))..))). ( -19.30)
>DroYak_CAF1 4131 102 + 1
AACUU-------GCAGACCCCACCAGCGAAUACAGACAUCAACAGCUCUGCGGACAACUAUCCACUGGCGCUCAAAAUGAUGUUCAACUACGACAUCCAGAGCAACGCC
.....-------((........((((......(((((.......).)))).(((......))).)))).((((.....((((((.......))))))..))))...)). ( -19.70)
>DroAna_CAF1 4315 100 + 1
--UUU-------GUAGAAUCCCCGGCAGGACAUGAAACUUAACAGCUCUGUGGAUCGCUAUCCCCUGGCCCUCAAAAUGAUGUUCAACUACGACAUCCAGAGCAACGCC
--...-------...........((((((........)))....((((((..((..((((.....))))..)).....((((((.......))))))))))))...))) ( -20.90)
>DroPer_CAF1 3981 107 + 1
--UUUUUCCACAACAGAGCCCACUGCUGGAUACCAAACUGGAAAGCUCCAUCAACACCUAUCCGCUGGCUCUCAAGAUGAUGUUCAACUACGACAUCCAGAGCAACGCC
--...........((((((.....)))(((((......((((....))))........))))).)))(((((...((((.(((......))).)))).)))))...... ( -23.04)
>consensus
AACUU_______GCAGACUCCACCAGCGAAUACAAAAAUCAACAGCUCUGUGGACAGCUAUCCACUGGCACUCAAAAUGAUGUUCAACUACGACAUCCAGAGCAACGCC
............................................((((((.(((......)))...............((((((.......))))))))))))...... (-13.48 = -14.15 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:21 2006