Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,530,614 – 6,530,709 |
Length | 95 |
Max. P | 0.576570 |
Location | 6,530,614 – 6,530,709 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 77.07 |
Mean single sequence MFE | -29.48 |
Consensus MFE | -21.25 |
Energy contribution | -20.45 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.55 |
Mean z-score | -0.95 |
Structure conservation index | 0.72 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.576570 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6530614 95 + 22224390 GUCGCGCUUUGUUCACAACUUUGGCGGCUCUGUGGACAACGUCUUCCACUACAGCCAGCCAUCUGCGGCCAGUGAUUUCGUGGGCGCCCAGUCGA-- ...((((((((.((((.....((((((((..(((((........)))))...)))).((.....)).))))))))...)).))))))........-- ( -30.70) >DroGri_CAF1 4519 97 + 1 GUCGCGAUUCGUACACAAUUUUGGCGGAUCCGUCGAUAAUAUUUACAAUUACAGCCAGCCAACGGCGGCCGCCGCCUUUGUGGAUGGCCUUACCACA ((((((((((((.((......)))))))).)).))))................((((.(((..(((((...)))))....))).))))......... ( -28.60) >DroEre_CAF1 3916 95 + 1 GUCGCGCUUUGUUCACAACUUUGGCGGCUCUGUGGACAACAUCUUCCACUACAGCCAGCCAUCGGCGGCUAGUGAUUUCGUGGGCGCCCAGGCUA-- .....(((..((.....))...)))((((..(((((........)))))...))))((((...((((.(((.((....))))).))))..)))).-- ( -32.70) >DroYak_CAF1 3922 95 + 1 GUCGCGCUUUGUUCACAACUUUGGCGGCUCUGUGGACAAUAUCUUCCACUAUAGCCAGCCAUCGGCGGCCAGUGAUUUCGUAGGCGCUCAGGCUA-- (((((((((((.((((.....((((((((..(((((........)))))...)))).(((...))).))))))))...)).))))))...)))..-- ( -34.90) >DroMoj_CAF1 4419 93 + 1 GUCCCGUUUCGUUCACAAUUUCGGCGGCUCCGUUGACAACAUUUACAACUACAGUCAGCCAACUGCUGCUGCAGCCUUUGUAGAUGGUCAGAC---- ((((((...............))).)))....(((((..(((((((((((.(((.((((.....))))))).))...))))))))))))))..---- ( -25.46) >DroAna_CAF1 4119 93 + 1 GUCGCGCUUUGUUCACAACUUUGGUGGCUCUGUCGAUAAUAUUUUUCAUUAUAGCCAGCCGUCGGCGGCCAGUGACUUUGUGGGUGCACU--CGA-- ...((((((...((((........(((((.((..((.........))..)).)))))((((....))))..))))......))))))...--...-- ( -24.50) >consensus GUCGCGCUUUGUUCACAACUUUGGCGGCUCUGUGGACAACAUCUUCCACUACAGCCAGCCAUCGGCGGCCAGUGACUUCGUGGGCGCCCAGACGA__ ...((((((...........(((((((((..(((((........)))))...)))).((.....)).))))).........)))))).......... (-21.25 = -20.45 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:20 2006