Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,528,340 – 6,528,458 |
Length | 118 |
Max. P | 0.500000 |
Location | 6,528,340 – 6,528,458 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 83.84 |
Mean single sequence MFE | -44.08 |
Consensus MFE | -33.41 |
Energy contribution | -34.22 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.23 |
Mean z-score | -1.52 |
Structure conservation index | 0.76 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6528340 118 + 22224390 ACUAAUGCUGCCGGAGAACGAGCCCGGUAGCUCCAUCAUGCCCGGCAAGGUGAAUCCCACGCAAUGCGAAUCAAUGACCAUGCUGUGUGCCCAGGUGAUGGGCAAUCAGGUGGCGGUG (((...((((((((.(......))))))))).(((((..((.(((((.(((.(......(((...)))......).))).))))).))(((((.....))))).....))))).))). ( -43.30) >DroVir_CAF1 1650 118 + 1 ACUCAAGUUGCCAGAGAACGAGCCGGGCAGCUCCAUAAUGCCCGGCAAGGUGAAUCCCACACAGUGCGAAUCUCUAACCAUGAUUUGUGCACAGGUCAUGGGCAACCAUGUGGCCGUG ......(((((((((((....((((((((.........))))))))...(((.....)))..........)))))...(((((((((....)))))))))))))))((((....)))) ( -46.00) >DroPse_CAF1 1628 118 + 1 ACUCAUGCUGCCGGAGAAUGAGCCGGGCAGCUCGAUUAUGCCUGGCAAGGUUAAUCCCACUCAGUGCGAGUCCAUUACCAUGAUCUGUGCCCAGGUUAUGGGCAACCAGGUGGCUGUC ......((..((.........((((((((.........))))))))..((((......((((.....))))......((((((((((....))))))))))..)))).))..)).... ( -45.00) >DroGri_CAF1 1950 118 + 1 GCUUCAGUUGCCCGAGAAUGAGCCGGGCAGCUCCAUUAUGCCCGGCAAGGUGAAUCCCACACAGUGCGAAUCGUUGACCAUGAUAUGCGCCCAGGUUAUGGGCAAUCAGGUGGCGGUC (((.(.((((((((((..((.((((((((.........))))))))...(((.....)))...(((((.(((((.....))))).))))).))..)).))))))))...).))).... ( -44.40) >DroMoj_CAF1 1692 118 + 1 GCUCUCUCUGCCAGAGAACGAGCCAGGCAGCUCUAUAAUGCCGGGCAAGGUGAACCCCACCCAGUGCGAGUCCUUGACUAUGAUUUGUGCACAGGUGAUGGGUAACCAGGUUGCGGUA (((((((.....)))))....(((.((((.........)))).)))..(((..((((((((..(..((((((.........))))))..)...))))..)))).))).....)).... ( -39.50) >DroPer_CAF1 1625 118 + 1 ACUCAUGCUGCCGGAGAAUGAGCCGGGCAGCUCGAUUAUGCCUGGCAAGGUUAAUCCCACUCAGUGCGAGUCCAUUACCAUGAUCUGUGCCCAGGUUAUGGGUAACCAGGUGGCUGUC ......((..((.........((((((((.........))))))))..(((((.....((((.....))))......((((((((((....)))))))))).))))).))..)).... ( -46.30) >consensus ACUCAUGCUGCCGGAGAACGAGCCGGGCAGCUCCAUUAUGCCCGGCAAGGUGAAUCCCACACAGUGCGAAUCCAUGACCAUGAUCUGUGCCCAGGUUAUGGGCAACCAGGUGGCGGUC ......((..((.........((((((((.........))))))))..(((...((.(((...))).))........((((((((((....))))))))))...))).))..)).... (-33.41 = -34.22 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:19 2006