Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,525,474 – 6,525,580 |
Length | 106 |
Max. P | 0.929801 |
Location | 6,525,474 – 6,525,580 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 70.81 |
Mean single sequence MFE | -20.07 |
Consensus MFE | -17.14 |
Energy contribution | -17.02 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.14 |
Mean z-score | 0.24 |
Structure conservation index | 0.85 |
SVM decision value | 1.20 |
SVM RNA-class probability | 0.929801 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6525474 106 + 22224390 GUAAAAAAUAAGAAGAAAACACAUUGAAAGCAACUAAAACUCUCGUUAAUCCCCGCCAGAAACCCGUGGUCCAGGCCAUGGGCAUCCUGAAGAAGGCCGCCGCCGA ........(((..(((.......(((....))).......)))..)))........(((...((((((((....))))))))....))).....(((....))).. ( -20.34) >DroSec_CAF1 5692 90 + 1 ----------------AAACGCAUUUAAAGCAGCUAAAACUCUCGUUAAUCCCCGCCAGAAACCCGUGGUGCAGGCCAUGGGCAUCCUGAAGAAGGCCGCCGCCGA ----------------.............((.((...(((....))).......(((.....((((((((....))))))))..((.....)).))).)).))... ( -20.10) >DroEre_CAF1 5975 104 + 1 GAAAGAUAUUAUACG--GAUACAUUGAAAGCGACUAAAACUGUCGAUAAUCCCCUCCAGAAACCCGUGGUGCAGGCCAUGGGCAUCCUGAAGAAGGCCGCCGCCGA ..............(--(((..........((((.......))))...)))).((.(((...((((((((....))))))))....))).))..(((....))).. ( -25.42) >DroWil_CAF1 5730 82 + 1 ---------UAU--A--UCU--------AUCUACCAAUCUUUUCGUUGUU---UUCCAGAAACCUGUUGUUCAGGCCAUGGGCAUAUUGAAAAAGGCCGCUGCCGA ---------...--.--...--------...........((((((.(((.---.((((....((((.....))))...)))).))).)))))).(((....))).. ( -15.70) >DroYak_CAF1 5853 89 + 1 -----AAACUAU--G--CAUAAA--------UACUGAAACUCUCGUUGAUCCCCGCCAGAAACCCGUGGUGCAGGCCAUGGGCAUCCUGAAGAAGGCCGCCGCCGA -----.....((--(--(.....--------.........(((.((.(....).)).)))...(((((((....))))))))))).........(((....))).. ( -18.80) >consensus _____A_A_UAU__G__AAUACAUU_AAAGCAACUAAAACUCUCGUUAAUCCCCGCCAGAAACCCGUGGUGCAGGCCAUGGGCAUCCUGAAGAAGGCCGCCGCCGA ........................................................(((...((((((((....))))))))....))).....(((....))).. (-17.14 = -17.02 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:15 2006