Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 834,036 – 834,129 |
Length | 93 |
Max. P | 0.752917 |
Location | 834,036 – 834,129 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.14 |
Mean single sequence MFE | -18.99 |
Consensus MFE | -5.68 |
Energy contribution | -6.08 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.84 |
Structure conservation index | 0.30 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.752917 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 834036 93 + 22224390 UGCAUCAGUCUAUUGCCUAAUAUGCGUUUAAACAG--AUUCCAUUAGAUCU------------------GUGUCCUGUCA-------AUAAUCACAUUUCUUCCGGUGCAACCCCCUACA ((((((.((.((((....)))).))......((((--(((......)))))------------------)).........-------.................)))))).......... ( -15.30) >DroSec_CAF1 34957 93 + 1 UGCAUCAGUCUAUUACCUAAUAUGCAUUUAAACAG--AUUCGAUUAGAUCU------------------GUGCCCUUUCA-------AUAAUCUCUUUUCUUCCGGUGCAACCCCCUACA ((((((.((.((((....)))).))......((((--(((......)))))------------------)).........-------.................)))))).......... ( -15.60) >DroSim_CAF1 31329 93 + 1 UGCAUCAGUCUAUUACCUAAUAUGCAUUUAAACAG--AUUCGAUUGGAUCU------------------GUGUCCCUUCA-------AUAAUCUCAUUUCUUCCGGUGCAACCCCCUACA ((((((.((.((((....)))).))......((((--((((....))))))------------------)).........-------.................)))))).......... ( -17.80) >DroEre_CAF1 34345 97 + 1 UGCAUCGGUAUAUU-CCUAAUAUGCGCUCGAACAG--AUUCAAUUAGAUCUCCCACC-----------UGUA-CCUGUAU-------AUAAUCGCAUUUUUUCCGGUGCA-CCGCCCAUA ((((((((......-......(((((.......((--(((......)))))......-----------((((-....)))-------)....))))).....))))))))-......... ( -17.13) >DroYak_CAF1 31683 119 + 1 CACAUCAGUAUAUUGCCUAAUAUGCGUUCAAACAGUGCUUCAAGUAGAUCUCCCUCCAUAUGGAGCACUGUGUCCAGUAUAUAAUGUAUAAUCGCAUUUCUUCCGGUGCA-CCGCCUAUA .......(((((((.....((((((......(((((((((((.((.((......)).)).))))))))))).....)))))))))))))....(((((......))))).-......... ( -29.10) >consensus UGCAUCAGUCUAUUACCUAAUAUGCGUUUAAACAG__AUUCAAUUAGAUCU__________________GUGUCCUGUCA_______AUAAUCGCAUUUCUUCCGGUGCAACCCCCUACA ((((((.((.((((....)))).))..............((.....))........................................................)))))).......... ( -5.68 = -6.08 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:47 2006