Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,505,286 – 6,505,386 |
Length | 100 |
Max. P | 0.663474 |
Location | 6,505,286 – 6,505,386 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 70.88 |
Mean single sequence MFE | -35.00 |
Consensus MFE | -22.29 |
Energy contribution | -22.37 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.26 |
Mean z-score | -1.29 |
Structure conservation index | 0.64 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.663474 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6505286 100 - 22224390 UUGGCGCGUGUG--UGGGUGU--GUUGGUGCGUGUUCAACUGGCAUUCUCAUGUGCACUUAAGAGUAUGCUACGUUUUAGAGCGGUGA----------------UCUUGUGCAUUUUGCC ..(((......(--((((.((--((..((.........))..)))).)))))((((((..((((...((((.(......)))))....----------------))))))))))...))) ( -30.40) >DroSec_CAF1 58978 118 - 1 UUGGCGCGUGUG--UGGGUGUGCGUGGGUGCGCGUUCAACUGGCAUUCUCCUGCGCACUUAAAAGUAUGCAACGGUUUACAGCGGUGAUCCAGUGCGUGCUCGAUCUUUUGCAUUUUGCC ..((((.((((.--((((((((((.((((((.((......))))))))...))))))))))..((((((((..((.((((....)))).))..)))))))).........))))..)))) ( -40.60) >DroYak_CAF1 58854 99 - 1 UUGGCGCGCGUGCGUAGGUAU----GUGUGCGCGUUUCACCGGCAUUCUCUCGCACACCUAAAAGUGUGCAAUGGUUU-GUGUGCUGA----------------UUUUGUGCAUUUUGCU ..((((((((..(((....))----)..)))))))).....((((.......((((((......))))))........-(((..(...----------------....)..)))..)))) ( -34.00) >consensus UUGGCGCGUGUG__UGGGUGU__GUGGGUGCGCGUUCAACUGGCAUUCUCAUGCGCACUUAAAAGUAUGCAACGGUUUAGAGCGGUGA________________UCUUGUGCAUUUUGCC ..(((((((((...(((((((....((((((.((......))))))))......)))))))...))))))...........((((.(((((((......)))))))..)))).....))) (-22.29 = -22.37 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:14 2006