Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,501,608 – 6,501,706 |
Length | 98 |
Max. P | 0.711127 |
Location | 6,501,608 – 6,501,706 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 83.33 |
Mean single sequence MFE | -26.27 |
Consensus MFE | -17.95 |
Energy contribution | -17.83 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.13 |
Mean z-score | -1.79 |
Structure conservation index | 0.68 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.711127 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6501608 98 - 22224390 CUACAACAGUCUGAAUUG-AAAACCACGCAUGUGU-------GAUGUGCGCGGGCUGUAAACAAACGUUACAGCUGCCACACGGAAAGAAAUUUUGGAUAUAUAUU ........(((..((...-....((.(((....))-------).((((.((((.((((((.......)))))))))))))).))........))..)))....... ( -23.36) >DroSec_CAF1 55426 98 - 1 CUACAACAGUUUGUAUCG-AAAACCACGCAUGUGU-------GAUGUGAGCGGUCUGUAAACAAACGUUACAGCUGCCACACGGAAAGAAAUUGUGGAUAUAUAUU ((((((...(((...(((-.....((((....)))-------).((((.((((.((((((.......)))))))))))))))))...))).))))))......... ( -25.90) >DroEre_CAF1 54988 92 - 1 CUAC---AGUCUGUGCCG-AAAACCACGCAUGUGU-------GAUGUGCGCGGGCUGUAAACAAACAUUACAGCUGCCACACGGAAAGAAAUUAUG---ACAUAUU ....---..(((...(((-.....((((....)))-------).((((.((((.((((((.......)))))))))))))))))..))).......---....... ( -25.60) >DroYak_CAF1 55225 100 - 1 CUAC---AGUCUGUACCUUCACACCACGCAUGUGUGAUGUGUGAUGUGCGCGGGCUGUAAACAAACCGUACAGCUGCCACACGGUAAGAAAUUAUG---AUAUAUC ....---..(((.((((.((((((((((....))))..))))))((((.((((.(((((.........))))))))))))).))))))).......---....... ( -30.20) >consensus CUAC___AGUCUGUACCG_AAAACCACGCAUGUGU_______GAUGUGCGCGGGCUGUAAACAAACGUUACAGCUGCCACACGGAAAGAAAUUAUG___AUAUAUU .........(((...(((......(((....)))..........((((.((((.((((((.......)))))))))))))))))..)))................. (-17.95 = -17.83 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:12 2006