Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,487,261 – 6,487,361 |
Length | 100 |
Max. P | 0.943169 |
Location | 6,487,261 – 6,487,361 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 79.66 |
Mean single sequence MFE | -16.08 |
Consensus MFE | -10.75 |
Energy contribution | -10.87 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.06 |
Mean z-score | -2.24 |
Structure conservation index | 0.67 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.943169 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6487261 100 - 22224390 UUCUACACUUAGUCUUCUUAUCCAUAUGGUUCCCGGUUCUUCUCUUG--UUUUCAUUUUUCUAUUCCCCUCCCCACCCCCCUGGGAAUAGAACUUUGAGUGC .....(((((((.........((....))..................--.........((((((((((..............))))))))))..))))))). ( -17.94) >DroSec_CAF1 41466 86 - 1 UUCUA--CUUAGUCUUCUUAUCCAUAUGGUUCCCAGUUCUUCUCUUG--UUUUCAUUUUUCUU------------CCCCCCUGGGAAUAGAACUUUGAGUGC ...((--(((((..((((...((....))(((((((...........--..............------------.....))))))).))))..))))))). ( -15.41) >DroYak_CAF1 41232 82 - 1 UUCUA--CUUAGUCUUCUUAUCCAUAUGGUUCCCAGUUCUGCUCUGGUGUUUUCUUUUUU------------------CCCUGGGAAUAAAACGUUGAGUGG ..(((--(((((.........((....))(((((((.........((......)).....------------------..))))))).......)))))))) ( -14.89) >consensus UUCUA__CUUAGUCUUCUUAUCCAUAUGGUUCCCAGUUCUUCUCUUG__UUUUCAUUUUUCU_____________CCCCCCUGGGAAUAGAACUUUGAGUGC .......(((((..((((...((....))(((((((............................................))))))).))))..)))))... (-10.75 = -10.87 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:07 2006