Locus 2421

Sequence ID X_DroMel_CAF1
Location 6,475,790 – 6,475,890
Length 100
Max. P 0.742011
window3936

overview

Window 6

Location 6,475,790 – 6,475,890
Length 100
Sequences 4
Columns 103
Reading direction forward
Mean pairwise identity 89.98
Mean single sequence MFE -21.91
Consensus MFE -19.45
Energy contribution -19.95
Covariance contribution 0.50
Combinations/Pair 1.11
Mean z-score -1.54
Structure conservation index 0.89
SVM decision value 0.45
SVM RNA-class probability 0.742011
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6475790 100 + 22224390
UAUCCACUCGCUGGCAAUCUGAUUACAUAUCAUCAAUCAACGGAAUUUUCAGACGAGGAGUUGAGGAAAUU-CUUGCAUUUCCGCAACAAACA--UAUAAAAU
......((((((((.((((((...................))).))).)))).))))..((((.((((((.-.....)))))).)))).....--........ ( -20.81)
>DroSec_CAF1 30188 101 + 1
UAUCCACUCGCUGGCAAUCUGAUUACAUAUCAUCAAUCAACGGAAUUUGCAGACGAGGAGUUGAGGAAAUUACUGGCAUUUCCGCAGCAAGCA--UAAAAUAU
......(((((((.(((((((...................))))..)))))).))))..((((.((((((.......)))))).)))).....--........ ( -21.11)
>DroEre_CAF1 29073 102 + 1
UAUCCAUUCGCCGGCAAUCUGAUUACAUAUCAUCAAUCAACGAGAUUUCCAGACGAGGAGUUGAGGAAAUU-CUUGCAUUUCCGCAGCAUACUCGUACAUACU
............((.((((((((.....))))((.......)))))).))..(((((..((((.((((((.-.....)))))).))))...)))))....... ( -22.10)
>DroYak_CAF1 29597 100 + 1
UAUCCACUCGCUGGCAAUCUGAUUACAUAUCAUCAAUCAACGAGAUUUUCAGACGAGGAGUUGAGGAAAUU-CUUGCAUUUCCGCAGCAUACA--AACAAAAU
......((((((((.((((((((.....))))((.......)))))).)))).))))..((((.((((((.-.....)))))).)))).....--........ ( -23.60)
>consensus
UAUCCACUCGCUGGCAAUCUGAUUACAUAUCAUCAAUCAACGAAAUUUUCAGACGAGGAGUUGAGGAAAUU_CUUGCAUUUCCGCAGCAAACA__UACAAAAU
......((((((((.(((((((((..........)))))....)))).)))).))))..((((.((((((.......)))))).))))............... (-19.45 = -19.95 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:03 2006