Locus 242

Sequence ID X_DroMel_CAF1
Location 831,558 – 831,664
Length 106
Max. P 0.584779
window364

overview

Window 4

Location 831,558 – 831,664
Length 106
Sequences 3
Columns 113
Reading direction reverse
Mean pairwise identity 70.31
Mean single sequence MFE -34.46
Consensus MFE -22.40
Energy contribution -22.73
Covariance contribution 0.34
Combinations/Pair 1.12
Mean z-score -1.18
Structure conservation index 0.65
SVM decision value 0.10
SVM RNA-class probability 0.584779
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 831558 106 - 22224390
AUGGGCGGCUUUCUGGCCCCCCGGUGAUUUUGGGGGCACAAGCUGCUGAAAGG----UGAAUAGGUUGGCAAGGGCGAAGGAUGGAGGAU---GGGGGAUUGUCGAUAGGGCA
.(.((((((((....((((((..(....)..))))))..)))))))).)....----.......((((((((...(....).........---......))))))))...... ( -31.17)
>DroEre_CAF1 31878 94 - 1
CUGGGCGGUUUUCAGGGCCCCCGGUGAUUUUGGGGGCACAAGCUGCUGAAAGCCGACUGAAUCGGCUGGAAAGGACGAAGGAUGGCGGUU---GGCG----------------
.(.((((((((.....((((((((.....))))))))..)))))))).)..((((((((..(((.((....))..))).......)))))---))).---------------- ( -40.40)
>DroYak_CAF1 29072 97 - 1
AUGGGCGGUUUUCAGGGCCCCCGGUGACUUUGGGGGCACGACCUGCUGAAAGGUGAGUGAAUCGUUCGGGAAGGGGAAAGGAUGUUGAGUUCAAGCG----------------
....((..(((((...((((((((.....))))))))....(((.(((((.(((......))).)))))..))))))))((((.....))))..)).---------------- ( -31.80)
>consensus
AUGGGCGGUUUUCAGGGCCCCCGGUGAUUUUGGGGGCACAAGCUGCUGAAAGG_GA_UGAAUCGGUUGGAAAGGGCGAAGGAUGGAGGAU___GGCG________________
.(.((((((((.....((((((((.....))))))))..)))))))).)................................................................ (-22.40 = -22.73 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:46 2006