Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,469,629 – 6,469,720 |
Length | 91 |
Max. P | 0.537683 |
Location | 6,469,629 – 6,469,720 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 93.39 |
Mean single sequence MFE | -19.08 |
Consensus MFE | -16.50 |
Energy contribution | -16.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.20 |
Structure conservation index | 0.86 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.537683 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6469629 91 + 22224390 GGCAUGAGUUGUGCAGCAGUAAGAACUUCACAGCAUCAGCGCAAGCAUAAAAGCAACACUAAAACAGUACAGUCAUACAUCGCUAUUUGGA .((.(((((((((.((.........)).)))))).)))((....))......))....(((((..(((...(.....)...))).))))). ( -16.90) >DroSec_CAF1 23860 91 + 1 GGCAUGAGUUGUGCAGCAGAAAGAACUUCACAGCAUCAGCGCAAGCAUAAAAGCAACACUAAAACAGUACAGUCAUACAUCGCUAGCUGGA .((.(((((((((.((.........)).)))))).)))((....))......))..........((((..(((........))).)))).. ( -19.80) >DroSim_CAF1 24322 91 + 1 GGCAUGAGUUGUGCAGCAGAAAGAACUUCACAGCAUCAGCGCAAGCAUAAAAGCAACACUAAAACAGUACAGUCAUACAACGCUAACUGGA .((.(((((((((.((.........)).)))))).)))((....))......))..........((((..(((........))).)))).. ( -19.50) >DroEre_CAF1 22979 89 + 1 GGCAUGAGUUGUGCAGCAGAAAGAACUUCACAGCAUCAGCGCAAGCAUAAAAUCAACACUAAAACGGUACAGUCAUACAUCGGUAU--AGU (((.(((((((((.((.........)).)))))).)))((....)).........................)))((((....))))--... ( -17.40) >DroYak_CAF1 23565 89 + 1 GGCAUGAGUUGUGCAGCAGAAAGAACUUCACAGCAUCAGCGCAAGCAUAAAAGCAACACUAAAAGAGUACAGUCAUGCAUCGCUAU--GGC .((((((.((((((.((.(((.....)))...))....((....))....................))))))))))))........--... ( -21.80) >consensus GGCAUGAGUUGUGCAGCAGAAAGAACUUCACAGCAUCAGCGCAAGCAUAAAAGCAACACUAAAACAGUACAGUCAUACAUCGCUAU_UGGA (((.(((((((((.((.........)).)))))).)))((....)).........................)))................. (-16.50 = -16.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:01 2006