Locus 2415

Sequence ID X_DroMel_CAF1
Location 6,462,594 – 6,462,701
Length 107
Max. P 0.853172
window3925

overview

Window 5

Location 6,462,594 – 6,462,701
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 86.64
Mean single sequence MFE -12.86
Consensus MFE -10.02
Energy contribution -10.06
Covariance contribution 0.04
Combinations/Pair 1.07
Mean z-score -1.93
Structure conservation index 0.78
SVM decision value 0.80
SVM RNA-class probability 0.853172
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 6462594 107 + 22224390
UCCAACGAUUUCGAUACGUUUCAAAUUGCAAAAACAGCAAAAAAAAAACACAGAAGAAAAAAAGGUAAAUAACCAACUUACUCAAAGUGCAUUAAGCACACACACAC
........((((((......))...((((.......))))...............))))....(((.....)))............((((.....))))........ ( -12.60)
>DroSec_CAF1 16978 104 + 1
UCCAACGAUUUCGAUUCGUUUCAAAUUGCAAAAACAGCAAAAAAAAA-AACAGAAGAAAAAAAGGUAAAUAACCAACUUACUCAAAGUGCAUUAAGCACACA--CAC
...(((((.......))))).....((((.......)))).......-...............(((.....)))............((((.....))))...--... ( -13.40)
>DroSim_CAF1 17468 99 + 1
UCCAACGAUUUCGAUUCGUUUCAAAUUGCAAAAACAGCAAAAA--AA-AACAGAAGAAAAAAAGGUAAAUAACCAACUUACUCAAAGUGCAUUAAGCACACA-----
........((((...((((((....((((.......))))...--.)-))).)).))))....(((.....)))............((((.....))))...----- ( -13.60)
>DroEre_CAF1 16240 86 + 1
GCCAACGGUUUCGAUUCGUUUCAAAUUGCAAA----------------AACAGAAGAAAAAAAGGUUAUUUACCAACUUACUCAAAGUGCAUUAAGCACACA-----
.....((((((.((......))))))))....----------------...............(((.....)))............((((.....))))...----- ( -10.50)
>DroYak_CAF1 17039 95 + 1
UCCAACGAUUCCGAUUCGUUUCAAAUUGCAAAAACAGCAAA-------AACAGAAGAAAAAAAGGUAAAUAACCAACUUACUGAAAGUGCAUUAAGCACACA-----
...(((((.......)))))(((..((((.......)))).-------...............(((.....))).......)))..((((.....))))...----- ( -14.20)
>consensus
UCCAACGAUUUCGAUUCGUUUCAAAUUGCAAAAACAGCAAAAA__AA_AACAGAAGAAAAAAAGGUAAAUAACCAACUUACUCAAAGUGCAUUAAGCACACA_____
.....((((((.((......))))))))...................................(((.....)))............((((.....))))........ (-10.02 = -10.06 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:53 2006