Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,457,863 – 6,457,955 |
Length | 92 |
Max. P | 0.927223 |
Location | 6,457,863 – 6,457,955 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 80.78 |
Mean single sequence MFE | -23.05 |
Consensus MFE | -15.18 |
Energy contribution | -16.43 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.06 |
Mean z-score | -2.21 |
Structure conservation index | 0.66 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.927223 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6457863 92 + 22224390 GAAUCAUUAUGCCCAGGUGACCCGACUCUGAUC---CCAUCUGAUCAGU-UUUGAGAUCUUGGGCAUUCCCUGUUGUCUUGCGCAUAAUUUGUAAA ((..((..(((((((((...(.(((..((((((---......)))))).-.))).)..)))))))))....))...))....(((.....)))... ( -24.90) >DroSec_CAF1 12303 95 + 1 GAAUCAUUAUGCCCAGGUGACCCGACUCUGAUCAUUCCAUCUGAUCAGG-UUUAAGAUCUUGGGCAUUCCCUGUUGUCAUGCGCAUAAUUUGUAAA ((..((..(((((((((......(((.(((((((.......))))))))-))......)))))))))....))...))....(((.....)))... ( -26.80) >DroEre_CAF1 11539 91 + 1 GAAUCAUUAUGCCCAUCUGAUCUAACU-UGAUC---CCAUCUGAUCCUCACCCCCGAUCGUGGGCAU-CCCCGUUGUCUUGUGCAUAAUUUGUAAC .....(((((((.((...(((..(((.-.((((---((((..((((.........))))))))).))-)...)))))).)).)))))))....... ( -19.50) >DroYak_CAF1 12490 80 + 1 GAAUCAUUAUGCCCAGGUGAUCCAACU-UGAUC---CCAUCUGAUCAAC-----------UGGGCAU-CCCCGUUGUCUUGUGCAUAAUUUGUAAC .....(((((((.((((.((((.....-.))))---))....((.((((-----------.(((...-))).)))))).)).)))))))....... ( -21.00) >consensus GAAUCAUUAUGCCCAGGUGACCCAACU_UGAUC___CCAUCUGAUCAGC_UUU_AGAUCUUGGGCAU_CCCCGUUGUCUUGCGCAUAAUUUGUAAA ........(((((((((..........((((((.........))))))..........)))))))))...............(((.....)))... (-15.18 = -16.43 + 1.25)
Location | 6,457,863 – 6,457,955 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 80.78 |
Mean single sequence MFE | -24.95 |
Consensus MFE | -16.92 |
Energy contribution | -17.93 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.04 |
Mean z-score | -1.94 |
Structure conservation index | 0.68 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.835908 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6457863 92 - 22224390 UUUACAAAUUAUGCGCAAGACAACAGGGAAUGCCCAAGAUCUCAAA-ACUGAUCAGAUGG---GAUCAGAGUCGGGUCACCUGGGCAUAAUGAUUC .......(((((((.((.(((....(((....)))..(((((((..-.((....)).)))---))))...)))((....)))).)))))))..... ( -27.40) >DroSec_CAF1 12303 95 - 1 UUUACAAAUUAUGCGCAUGACAACAGGGAAUGCCCAAGAUCUUAAA-CCUGAUCAGAUGGAAUGAUCAGAGUCGGGUCACCUGGGCAUAAUGAUUC .......(((((((.((.(......(((....)))..(((((...(-((((((((.......))))))).)).))))).).)).)))))))..... ( -28.60) >DroEre_CAF1 11539 91 - 1 GUUACAAAUUAUGCACAAGACAACGGGG-AUGCCCACGAUCGGGGGUGAGGAUCAGAUGG---GAUCA-AGUUAGAUCAGAUGGGCAUAAUGAUUC .......(((((((.((.......(((.-...)))..((((..((.(...((((......---)))).-).)).))))...)).)))))))..... ( -20.80) >DroYak_CAF1 12490 80 - 1 GUUACAAAUUAUGCACAAGACAACGGGG-AUGCCCA-----------GUUGAUCAGAUGG---GAUCA-AGUUGGAUCACCUGGGCAUAAUGAUUC .......(((((((.........(((((-((.((.(-----------.((((((......---)))))-).).))))).)))).)))))))..... ( -23.00) >consensus GUUACAAAUUAUGCACAAGACAACAGGG_AUGCCCAAGAUCU_AAA_GCUGAUCAGAUGG___GAUCA_AGUCGGAUCACCUGGGCAUAAUGAUUC .......(((((((.((.(((....(((....))).............((((((.........)))))).)))((....)))).)))))))..... (-16.92 = -17.93 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:53 2006