Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,455,726 – 6,455,821 |
Length | 95 |
Max. P | 0.611770 |
Location | 6,455,726 – 6,455,821 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 77.39 |
Mean single sequence MFE | -25.13 |
Consensus MFE | -15.48 |
Energy contribution | -16.40 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.19 |
Mean z-score | -1.42 |
Structure conservation index | 0.62 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.611770 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6455726 95 + 22224390 UCAAAUCCACAA------CCAUCUCCACCUCGAUCGCGACCAAGCAUUUUGAGCUCCGGCUCCAUGUCGUUGGCAUGUGGGUUGUGGGUGAAAUGAAACCA (((.((((((((------(((((........)))((((.((((((((...((((....)))).))))..))))..))))))))))))))....)))..... ( -29.20) >DroSec_CAF1 10197 89 + 1 UCAAAUCCAU------------CUCCACCUCGAUCGCCACCGAGCAUUUCGAGCUCCGGCUCCAUGUCGUUGGCAUGUGGGUUGUGGGUGAAAUGAAACCA .......(((------------(..((.((((...((((.(((.(((...((((....)))).)))))).))))...)))).))..))))........... ( -27.20) >DroSim_CAF1 10167 101 + 1 UCAAAUCCAUCUCCAUCUCCAUCUCCACCUCGAUCGCCACCGAGCAUUUCGAGCUCCGGCUCCAUGUCGUUGGCAUGUGGGUUGUGGGUGAAAUGAAACCA .............(((...((((..((.((((...((((.(((.(((...((((....)))).)))))).))))...)))).))..))))..)))...... ( -27.40) >DroEre_CAF1 9486 88 + 1 UCACAUCCAUCU------------CCAUCUCCGUCUCCA-CAACCAUUUUGAGCUCCGGCUCCAUGUCGUUGGCAUGUGGGUUGUGGGUGAAAUGAAACCA ............------------...((....((((((-(((((.....((((....))))(((((.....)))))..))))))))).))...))..... ( -26.50) >DroYak_CAF1 10492 82 + 1 UCAAAUCCAUCU------------CCAUC------UACA-CAACCAUUUUGAGCUCCGGCUCCAUGUCGUUGGCAUAUGGGUUGUGGGUGAAAUGAAACCA ............------------.....------..((-(((((.....((((....)))).((((.....))))...)))))))(((........))). ( -21.90) >DroAna_CAF1 12668 89 + 1 UCAUCUGUAGCU------------CCAUCUCCAUAUACUAUAUAUAUAUAUAUUGCCAUCAGCAUGUCGUUGCCAUGUGGGUUGUGGGUGAAAUGAAACCA (((((..(((((------------((((..........(((((....))))).........(((......))).))).))))))..))))).......... ( -18.60) >consensus UCAAAUCCAUCU____________CCACCUCGAUCGCCACCAAGCAUUUUGAGCUCCGGCUCCAUGUCGUUGGCAUGUGGGUUGUGGGUGAAAUGAAACCA ............................................((((((..(((((((((((((((.....))))).)))))).))))))))))...... (-15.48 = -16.40 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:49 2006