Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 830,308 – 830,413 |
Length | 105 |
Max. P | 0.831940 |
Location | 830,308 – 830,413 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.54 |
Mean single sequence MFE | -27.65 |
Consensus MFE | -14.92 |
Energy contribution | -16.04 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.05 |
Mean z-score | -2.14 |
Structure conservation index | 0.54 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.831940 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 830308 105 - 22224390 GAAUUGAAUGCAGGAAAAUUUAUGGCACUUCGCCAUAAGCC-AGCCAACGAACCCGAACC--------------GCGUUCAUCCCGACCCGGGAUUCUCCUGCCCCAGAAUGCCAGUCAU ....(((((((.((....((((((((.....))))))))..-..))..((....))....--------------)))))))....(((..((.(((((........))))).)).))).. ( -31.30) >DroSec_CAF1 31224 96 - 1 GAAUUGAAUGCAGGUAAAUUUAUGGCACUUCGCCAUAAGCC-AGCCAACGAAACCGAACC--------------GCGUUCAUUCCGAC---------UCCUGCCCCAGACUGCCAGUCAU ((((.((((((.(((...((((((((.....))))))))..-.)))..((....))....--------------)))))))))).(((---------(...((........)).)))).. ( -27.10) >DroSim_CAF1 27586 96 - 1 GAAUUGAAUGCAGGUAAAUUUAUGGCAAUUCGCCAUAAGCC-AGCCAACGAAACCGAACC--------------GCGUUCAUCCCGAC---------UCCUGCCCCAGACUGCCAGUCAU ....(((((((.(((...((((((((.....))))))))..-.)))..((....))....--------------)))))))....(((---------(...((........)).)))).. ( -26.00) >DroEre_CAF1 30834 91 - 1 -----GAAUGCAGGGAAAUUUAUGGCCAUUUACCAUAAGCC-GGCCAACGAAACCCAACC--------------GCGUUCAUCCCAAC---------UCCUGCCCCAGAAUGGCCGUCAU -----((((((.(((.......(((((..............-)))))......)))....--------------))))))........---------....(((.......)))...... ( -19.66) >DroYak_CAF1 27849 106 - 1 -----GAAUGCAGGCAAAUUUAUGGCCAUUUACCAUAAGCCAGGCCAACGAAACCGAGCCAUCCCGCUCGUUGGGAGUUCAUCCCAAC---------UCCUGCCCCAGCAUCGCAGUCAU -----((.(((.(((....((((((.......))))))))).(((..........((((......))))(((((((.....)))))))---------....)))........))).)).. ( -34.20) >consensus GAAUUGAAUGCAGGUAAAUUUAUGGCAAUUCGCCAUAAGCC_AGCCAACGAAACCGAACC______________GCGUUCAUCCCGAC_________UCCUGCCCCAGAAUGCCAGUCAU .....((((((.(((...((((((((.....))))))))....)))..((....))..................))))))........................................ (-14.92 = -16.04 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:45 2006