Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,447,064 – 6,447,160 |
Length | 96 |
Max. P | 0.854467 |
Location | 6,447,064 – 6,447,160 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 80.35 |
Mean single sequence MFE | -29.73 |
Consensus MFE | -12.44 |
Energy contribution | -12.36 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.18 |
Mean z-score | -2.44 |
Structure conservation index | 0.42 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.854467 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6447064 96 - 22224390 CUGGAAAUUAUUGUAAUCCCAUAACCGCUAUCUCU-GCGCCAGUGUGCGUGAGUGCGAGUGGUAAAGGGAUAGGGUAGGGGAAAGAGCGGGAGCUCA ................((((...(((.((((((((-..((((.((..(....)..))..))))..)))))))))))..))))..((((....)))). ( -43.00) >DroSec_CAF1 4582 90 - 1 CUGGAAAUUAUUGUAAUCCCAUAAGCGCUAUCUCU-GCGCCAGUGUGCGUGAGU------GGGAAAGAGAAAGGGUGGGGAAAAGAGCGGGGGUGCA ................((((....((.((.(((((-...((.....((....))------.))..))))).)).)).)))).....(((....))). ( -23.80) >DroSim_CAF1 4594 90 - 1 CUGGAAAUUAUUGUAAUCCCAUAAGCGCUAUCUCU-GCGCCAGUGUGCGUGAGU------GGGAAAGAGAAAGGGUAGGGGAAAGAGCGGGGGCGCA ................((((....((.((.(((((-...((.....((....))------.))..))))).)).))..))))....(((....))). ( -25.10) >DroEre_CAF1 4006 77 - 1 CUGGAAAUUAUGGUAAACCCAUAAGCGCUGUCUCU-GCGCCAGUGUGCGUGAGU------GCCAGU------------GGGAAAGAGA-GGGGCGCA .......((((((.....))))))(((((.(((((-...(((.((..(....).------.).).)------------))...)))))-.).)))). ( -30.50) >DroYak_CAF1 4791 79 - 1 CUGGAAAUUAUUGUAAUCCCAUAAGCGCUAUCUCUCACGCCAGUGUGCGUGAGU------GCGAGU------------GGGAAAGAGACGGGGCGCA .(((..............)))...(((((.(((((..(.(((.((..(....).------.))..)------------)))..)))))...))))). ( -26.24) >consensus CUGGAAAUUAUUGUAAUCCCAUAAGCGCUAUCUCU_GCGCCAGUGUGCGUGAGU______GGGAAAG_GA_AGGGU_GGGGAAAGAGCGGGGGCGCA .(((..............)))...(((((..((((.(((....)))((....)).............................))))....))))). (-12.44 = -12.36 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:46 2006