Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,441,025 – 6,441,136 |
Length | 111 |
Max. P | 0.760591 |
Location | 6,441,025 – 6,441,136 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 90.27 |
Mean single sequence MFE | -35.76 |
Consensus MFE | -26.00 |
Energy contribution | -26.72 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.13 |
Mean z-score | -2.14 |
Structure conservation index | 0.73 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.760591 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6441025 111 + 22224390 AACGGAUGGCACAAACUGGAGGGCAAACUGCAGCAGGAGCAGCGGCAAUGGUGACAGCGGCGUCAACAUCUGCAGUUUGUCUUAGAUAAUAGAUUCGAAUAAGUUAGCCCA .......(((...((((..((((((((((((((........((.((..((....)))).))........)))))))))))))).((........)).....)))).))).. ( -35.09) >DroSec_CAF1 4220 111 + 1 AUCGGAUGGCACAAACUGGAGGGCAAACUGCAGCAGGAGCAGCGGCAAUGGUGACAGCGGCGGCAACAUCUGCAGUUUGUCUUAGAUAAGAGAUUCGAAUAAGUUAGUUCA .((((((..(.........((((((((((((((..(..((.((.((..((....)))).)).))..)..))))))))))))))......)..))))))............. ( -38.06) >DroSim_CAF1 4270 111 + 1 AUCGGAUGGCACAAACUGGAGGGCAAACUGCAGCAGGAGCAGCGGCAAUGGUGACAGCGGCGGCAACAUCUGCAGUUUGUCUUAGAUAAGAGAUUCGAAUAAGUUAGUUCA .((((((..(.........((((((((((((((..(..((.((.((..((....)))).)).))..)..))))))))))))))......)..))))))............. ( -38.06) >DroEre_CAF1 3999 102 + 1 AUCGGAUGGCACAAACUGGAGGGCAAACUGCAGCAG---------CAGUUGUGACAGCGGCGGCAACAUCUGUAGUUUGUCUUAGAAAAGAGAUUCGCAUAAGUUCGCCCA ..(((((.((.........((((((((((((((..(---------(.((((...)))).))(....)..)))))))))))))).(((......)))))....))))).... ( -31.00) >DroYak_CAF1 4190 111 + 1 AUCGGAUGGCACAAACUGGCGGGCAAACUGCAGCAGGAGCAGCGGCAAUGGUGUCGGCGGCGGCAACAUAUGUAGUUUGUCCUAGAUAAGAGAUUCGCAUAAGUUAGCCCA .......(((...((((.((((((((((((((((....((..(((((....))))))).))(....)...))))))))))))..((........))))...)))).))).. ( -36.60) >consensus AUCGGAUGGCACAAACUGGAGGGCAAACUGCAGCAGGAGCAGCGGCAAUGGUGACAGCGGCGGCAACAUCUGCAGUUUGUCUUAGAUAAGAGAUUCGAAUAAGUUAGCCCA .......(((...((((..((((((((((((((..(..((.((.((..........)).)).))..)..)))))))))))))).((........)).....)))).))).. (-26.00 = -26.72 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:45 2006