Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,436,839 – 6,436,935 |
Length | 96 |
Max. P | 0.943374 |
Location | 6,436,839 – 6,436,935 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 72.65 |
Mean single sequence MFE | -36.84 |
Consensus MFE | -22.00 |
Energy contribution | -22.82 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.36 |
Mean z-score | -1.80 |
Structure conservation index | 0.60 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.943374 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6436839 96 - 22224390 GCCGGUAUCUUGGUGUUCAUACUCCCGAUGAGGGCCUGCAGCGACAGGUCGUAUAGGGUCUUCGGGGAGUUGGGAUUUAUUUUGGG-------GAUCAAGACC .......(((((((.((((.((((((..(((((((((...((((....))))...)))))))))))))))............))))-------.))))))).. ( -36.22) >DroVir_CAF1 36 100 - 1 GUCGGCACUUUGCAGUCCAGGCCGUUGACAACGGCCAUCAAUGACAGAUCGUACAGUGGCUCGGGGCUGUUGUUGUUGU-UGUGCCCGGAGGC--CGAUGACA ((((((.(((((((.....((((((.....))))))..(((..(((......((((..((.....))..)))))))..)-)))))..))))))--)))).... ( -38.50) >DroSec_CAF1 119 91 - 1 GCCGGAAUCUUGGUGUUCAUACUCCCGAUGAGGGCCUCCAGCGACAGGUCGUAUAGGGUCUUCGGGGAGUUGGGAAAUAAUCUGGG-------GCUCA----- ....((..((..(..(((..((((((..(((((((((...((((....))))...)))))))))))))))...))).....)..))-------..)).----- ( -35.70) >DroSim_CAF1 20 91 - 1 GCCGGAAUCUUGGUGUUCAUACUCCCGAUGAGGGCCUCCAGCGACAGGUCGUAUAGGGUCUUCGCGGAGUUGGGAAAUAAUCUGGG-------GCCCA----- ...((..(((.(((.(((..(((((.(.(((((((((...((((....))))...)))))))))))))))...)))...))).)))-------..)).----- ( -33.30) >DroEre_CAF1 21 96 - 1 GCCGGAAUCUUGGUGCUCAUGCUCCCGAUGAGGGCCUGCAGCGACAGGUCGUAUAGGGCCUUUGGAGAGUUGGGAUUUGGAUUGGG-------AACCAGGACU .......(((((((.((((...(((((((((((((((...((((....))))...)))))))).....))))))).......))))-------.))))))).. ( -37.50) >DroYak_CAF1 21 96 - 1 GCCGGAAUCUUGGUGUUCAUACUCCCGAUGAGGGCCUGCAGCGACAGGUCGUAUAGGGCCUUCGGGGUGUUGGGAAUUGGAUUUUG-------GAUCAGGGCU .(((((((((....((((..((.(((..(((((((((...((((....))))...)))))))))))).))...)))).))))))))-------)......... ( -39.80) >consensus GCCGGAAUCUUGGUGUUCAUACUCCCGAUGAGGGCCUGCAGCGACAGGUCGUAUAGGGUCUUCGGGGAGUUGGGAAUUAAUUUGGG_______GACCA_GAC_ (((((....))))).((((.((((((..(((((((((...((((....))))...)))))))))))))))))))............................. (-22.00 = -22.82 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:42 2006