Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,436,042 – 6,436,136 |
Length | 94 |
Max. P | 0.852167 |
Location | 6,436,042 – 6,436,136 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 85.20 |
Mean single sequence MFE | -29.06 |
Consensus MFE | -20.00 |
Energy contribution | -22.00 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.08 |
Mean z-score | -2.28 |
Structure conservation index | 0.69 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.852167 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6436042 94 - 22224390 ACUUUUUCUUUAUUUUCGUCUGUCGAUUUAG--UAACUAGUGGUGGCAAACAGCUGGUCCUAUCGAUAGACACUGCUGCGGUUCGUCACCGCGGAC .................((((((((((....--..((((((.((.....)).))))))...))))))))))....(((((((.....))))))).. ( -32.20) >DroSec_CAF1 52969 94 - 1 ACUUUUUCUUUAUUUUCGUCUGUCGAUUUAG--UAACUAGUGGUGGCAACCAGCUGGUCCUAUCGAUAGACACUGCUGCGGGUCUUCACCGCGGAA .................((((((((((....--..(((((((((....)))).)))))...))))))))))....((((((.......)))))).. ( -34.40) >DroSim_CAF1 52567 94 - 1 ACUUUUUCUUUAUUUUCGUCUGUCGAUUUAG--UAACUAGUGGUGGCAACCAGCUGGUCCUAUCGAUAGGCACUGCUGCGGGUCUUCACCGCGGAA .................((((((((((....--..(((((((((....)))).)))))...))))))))))....((((((.......)))))).. ( -33.80) >DroEre_CAF1 53375 82 - 1 ACUUUUUCUUUAUUUUCGUGUGUCGAUUGGAUGGAACUAGUGGUGGCAAACAGCUGGUCCUAUCGAUAGCAAC-------------CACUACGGA- ..............((((((((..(..(.(((((.((((((.((.....)).)))))).))))).)...)...-------------))).)))))- ( -19.50) >DroYak_CAF1 55838 95 - 1 ACUUUUUCUUUAUUUUCGUGUGUCGAUUUGAUGGAACUAGUGGUGGCAAACAGCUGGUCUUAUCGAUAGCCACUGCUGCGGGACUUCACUGCGGA- .................(((.((....((((((..((((((.((.....)).))))))..))))))..)))))..((((((.......)))))).- ( -25.40) >consensus ACUUUUUCUUUAUUUUCGUCUGUCGAUUUAG__UAACUAGUGGUGGCAAACAGCUGGUCCUAUCGAUAGACACUGCUGCGGGUCUUCACCGCGGA_ .................((((((((((........((((((..((.....))))))))...))))))))))....((((((.......)))))).. (-20.00 = -22.00 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:40 2006