| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 6,432,278 – 6,432,374 |
| Length | 96 |
| Max. P | 0.940466 |
| Location | 6,432,278 – 6,432,374 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 80.81 |
| Mean single sequence MFE | -22.94 |
| Consensus MFE | -20.27 |
| Energy contribution | -20.22 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.88 |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.940466 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6432278 96 + 22224390 GCGCCGCCACUGUCAAGGAUCAACUUCUGCAGUGGUGUAAGCAUAAAACGCAGGAAUAUGAGGUAUCC-AAAACCUAAAC---CAAUCCAA-AAAA--------AAA-AA----- ((..(((((((((.(((......)))..)))))))))...))..........(((.....((((....-...))))....---...)))..-....--------...-..----- ( -24.20) >DroPse_CAF1 61393 100 + 1 GCGCUGCCACUGUCAAGGAUCAGCUUCUGCAGUGGUGUCAGCACAAAACGCAGGAAUACGAGGUAUCCGAAAACCUAAAC---CAACAAAA-CAAA---------AA-AAAACC- (.(((((((((((..(((.....)))..)))))))...)))).)........((......((((........))))...)---).......-....---------..-......- ( -21.40) >DroWil_CAF1 50229 110 + 1 GCGCCGCCACUGUCAAGGAUCAACUUCUGCAGUGGUGUCAGCACAAAACGCAGGAAUAUGAGGUAUUCCCACCCCUACAA--CCACCAAAC-CACCCAACUCAAUAU-AAGGGC- ((..(((((((((.(((......)))..)))))))))...))..........(((((((...)))))))...........--.........-..(((..........-..))).- ( -25.90) >DroMoj_CAF1 65365 101 + 1 GCGCCGCCACUGUCAAGGAUCAACUUCUGCAGUGGUGUCAGCACAAAACGCAGGAAUAUGAGGUAUCC-AAAACCUAAAA---AACAAAAAAGUUA---------AA-UUUAAUG ((..(((((((((.(((......)))..)))))))))...))....(((...........((((....-...))))....---.........))).---------..-....... ( -21.25) >DroAna_CAF1 61218 99 + 1 GCGCCGCCACUGUCAAGGAUCAACUUCUGCAGUGGUGUCAGCAUAAAACGCAGGAAUAUGAGGUAUCC-AAAACCUAAACAACCAACCAAC-CAAC--------CAA-AA----- ((..(((((((((.(((......)))..)))))))))...))..........((......((((....-...))))......)).......-....--------...-..----- ( -23.50) >DroPer_CAF1 59070 101 + 1 GCGCUGCCACUGUCAAGGAUCAGCUUCUGCAGUGGUGUCAGCACAAAACGCAGGAAUACGAGGUAUCCGAAAACCUAAAC---CAACAAAA-CAAA---------AAAAAAACC- (.(((((((((((..(((.....)))..)))))))...)))).)........((......((((........))))...)---).......-....---------.........- ( -21.40) >consensus GCGCCGCCACUGUCAAGGAUCAACUUCUGCAGUGGUGUCAGCACAAAACGCAGGAAUAUGAGGUAUCC_AAAACCUAAAC___CAACAAAA_CAAA_________AA_AA_A_C_ ((..(((((((((..(((.....)))..)))))))))...))..................((((........))))....................................... (-20.27 = -20.22 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:38 2006