Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,430,227 – 6,430,318 |
Length | 91 |
Max. P | 0.944740 |
Location | 6,430,227 – 6,430,318 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 84.23 |
Mean single sequence MFE | -21.23 |
Consensus MFE | -15.81 |
Energy contribution | -16.03 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.12 |
Mean z-score | -2.77 |
Structure conservation index | 0.74 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.944740 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6430227 91 + 22224390 UACAUACAUUCAUAACUACACAGAUGCAAAAUGUGCGCAGUUUUAAGCAUACAAAUGAACAUAAAAUUGAGCUU----------------AUGCAUUUGCAUUCAAA ....................((((((((......((.((((((((..(((....)))....)))))))).))..----------------.))))))))........ ( -16.80) >DroSec_CAF1 47184 103 + 1 UA----CAUUCAUAACUACACAGAUGCAAAAUGGGCGCAGUUCUAAGCGCACAAAUGAACAUAAAAUUGAGCUUAAAUGGCAAAUUAUGUAUGUAUUUGCAUUCAAA ..----................((((((((.((.((((........)))).)).....(((((.((((..(((.....))).))))...))))).)))))))).... ( -21.10) >DroSim_CAF1 45926 103 + 1 UA----CAUUCAUAACUACACAGAUGCAAAAUGUGCGCAGUUUUAAGCGCACAAAUGAACAUAAAAUUGAGCUUAAAUGGCAAAUUAUGUAUGUAUUUGCAUUCAAA ..----................((((((((.(((((((........))))))).....(((((.((((..(((.....))).))))...))))).)))))))).... ( -25.80) >consensus UA____CAUUCAUAACUACACAGAUGCAAAAUGUGCGCAGUUUUAAGCGCACAAAUGAACAUAAAAUUGAGCUUAAAUGGCAAAUUAUGUAUGUAUUUGCAUUCAAA ....................((((((((...(((((((........)))))))......((......))......................))))))))........ (-15.81 = -16.03 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:37 2006