Locus 240

Sequence ID X_DroMel_CAF1
Location 826,963 – 827,070
Length 107
Max. P 0.992869
window362

overview

Window 2

Location 826,963 – 827,070
Length 107
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 66.55
Mean single sequence MFE -33.11
Consensus MFE -14.03
Energy contribution -14.91
Covariance contribution 0.88
Combinations/Pair 1.33
Mean z-score -2.49
Structure conservation index 0.42
SVM decision value 2.36
SVM RNA-class probability 0.992869
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 826963 107 - 22224390
AAGUGGGAUUAACGCUCUUAGGUAUUUAAAUAUUUACUUAG-UUGCCUGAGUUUGCGUUUCGAAAUAAAA-GGAACGAUC-----------CCAUUCACUGCCCGCAAAUUGUGGCUCCA
.(((((((((...((.((((((((.((((........))))-.))))))))...))(((((.........-)))))))))-----------)))))....(((.((.....))))).... ( -32.60)
>DroSec_CAF1 28288 108 - 1
AAGUGGGAUUAACGCUCUUAGGUAUUUAAGUAAGCACUCAU-UUGCCUGAGUUUGCGUUUCGAAAUGAAGGGGAACGAUC-----------CCUUUCACUGCCCGCAACUUGUGGCUCCA
..(((((...(((((.((((((((..(.(((....))).).-.))))))))...)))))......(((((((((....))-----------)))))))...))))).............. ( -38.60)
>DroSim_CAF1 24685 107 - 1
AAGUGGGAUUAACGCUCUUAGGUAUUUAAAUAAGCACUCAU-UUGCCUGAGUUUGCGUUUCGAAAUGAAG-GGAACGAUC-----------CCUUUCACUGCCCGCAACUUGUGGCUCCA
..(((((...(((((.((((((((.................-.))))))))...))))).......((((-(((....))-----------))))).....))))).............. ( -31.57)
>DroEre_CAF1 28225 100 - 1
AAGUGGGAUCUGCGCCUUUGGUUCAGGAGAGGAA--------CUU-UCACGUUUGUGA----------AA-GGAACGAUCUGUAACCAGGACAUUGCACUGCCCGCCACUUGUGGCUCCA
....(((...((((..(((((((((((...(...--------(((-((((....))))----------))-)...)..)))).)))))))....))))...)))((((....)))).... ( -33.70)
>DroYak_CAF1 25065 104 - 1
AAGUCGGUUUUACACUUUCAGUUAUUUAAAUACGCACACAGGCUGCCUGCCUUUGUGU---------------UCCGAUCUUUAACAAGGGUAUUCCACUGC-CGCAACUUGUGGCUCCA
.(((.((...(((.((((..((((.........(((((.((((.....)))).)))))---------------.........)))))))))))..)))))((-(((.....))))).... ( -29.07)
>consensus
AAGUGGGAUUAACGCUCUUAGGUAUUUAAAUAAGCACUCAG_UUGCCUGAGUUUGCGUUUCGAAAU_AAA_GGAACGAUC___________CCUUUCACUGCCCGCAACUUGUGGCUCCA
.....(((..(((((.((((((((...................))))))))...))))).........................................((.(((.....)))))))). (-14.03 = -14.91 +   0.88) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:44 2006