Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 71,672 – 71,772 |
Length | 100 |
Max. P | 0.650167 |
Location | 71,672 – 71,772 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -27.63 |
Consensus MFE | -20.95 |
Energy contribution | -21.07 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.78 |
Structure conservation index | 0.76 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.650167 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 71672 100 + 22224390 CCUAUAGUUGAGUUACUCAGCUAGUGGGUGUGCAAGGGAUAAAUUGCAAUAUUAUUUUGAAGAAUAAUAAAAUAAAAUUGCAGCCUAUGCGCGUUAGAGU ((((((((((((...))))))).))))).(((((.(((.....(((((((.((((((((........)))))))).)))))))))).)))))........ ( -31.70) >DroSec_CAF1 48318 100 + 1 CCUAUAGUUGAGAUACUCAGCUAGUGGGUGAGCAAGGGAGUAAUUUCAAUAUUAUUUUGAAGAAUAAUAUAAUAAACUUGCGGCCUGUGCGCGUUAGAGU .(((((((((((...))))))))(..(((..(((((.(((....))).(((((((((....)))))))))......))))).)))..)......)))... ( -26.70) >DroSim_CAF1 49246 100 + 1 CCUAUAGUUGAGAUACUUAGCUAGUGGGUGAGCAAGGGAGUAAUUUCAAUAUUAUUUUGAAGAAUAAUAUAAUAAACUUGCGGCCUGUGCGCGUUAGAGU .(((((((((((...))))))))(..(((..(((((.(((....))).(((((((((....)))))))))......))))).)))..)......)))... ( -24.50) >consensus CCUAUAGUUGAGAUACUCAGCUAGUGGGUGAGCAAGGGAGUAAUUUCAAUAUUAUUUUGAAGAAUAAUAUAAUAAACUUGCGGCCUGUGCGCGUUAGAGU ((((((((((((...))))))).)))))...(((.(((..........(((((((((....))))))))).............))).))).......... (-20.95 = -21.07 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:36 2006