Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,427,256 – 6,427,383 |
Length | 127 |
Max. P | 0.963174 |
Location | 6,427,256 – 6,427,354 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 64.61 |
Mean single sequence MFE | -36.78 |
Consensus MFE | -14.32 |
Energy contribution | -17.00 |
Covariance contribution | 2.68 |
Combinations/Pair | 1.48 |
Mean z-score | -2.35 |
Structure conservation index | 0.39 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.963174 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6427256 98 - 22224390 GAUCUGUUGAGGU--------------AAUUGCUUG-GGCAAUUGUGGAGGGAUCUGCUGAGGCAACUGCUUUGGCAACUGUUGCGGCAAUUGUUGAGGUAACUGUUGUGGGA------- ..((..(...(((--------------...(((((.-(((((((((.(..(.(..(((..((((....))))..)))..).)..).))))))))).))))))))...)..)).------- ( -33.60) >DroGri_CAF1 51859 110 - 1 UAUCAGCUGCGGCUUGUUACUGCGAUCAACCGGUGGCGGCAACUGUGACAUUAACUGUGGCGCCAGCUGUGGCGCCAGCUGUGGCGUCAGCUGUGGCGCCAGCU---GUGGCG------- .....((..((((.((((((.((.(((....))).))(....).)))))).......((((((((((((..((((((....))))))))))..)))))))))))---)..)).------- ( -54.60) >DroEre_CAF1 44320 98 - 1 GAUCUGUUGAGGU--------------AAUUGCUUG-GGCAACUGUUGUGGGAUCUGCUGAGGAAACUGCUUUGGUAACUGUUGCGGCAAUUGUUGAGGUAACUGUUGUGGGA------- ..((..(...(((--------------...(((((.-(((((.(((((..(.(..(((..(((......)))..)))..).)..))))).))))).))))))))...)..)).------- ( -28.70) >DroYak_CAF1 47010 105 - 1 GAUCUGUUGGGGU--------------AAUUGCUUG-CGCAAUUGUUGUGGGAUCUGCUGAGGCAGCUGCUUUGGUAACUGUUGCGGCAAUUGUUGAGGUAACUGUUGUGGGAUCUGUUG (((((...(.(((--------------...(((((.-.((((((((((..(.(..(((..((((....))))..)))..).)..))))))))))..)))))))).)....)))))..... ( -35.10) >DroAna_CAF1 56015 98 - 1 UAUUUGCUGAGGC--------------AGUUGUUGG-GGCAGUUUCUGGGGCAAGGGUUGAGGCUUCUGUUGUGGCAACUGUGGGGGUACUUUAUGGGGCACCUGCUGAGGCA------- ....((((..(((--------------((.((((..-.((((((.(((.((((..(((....)))..)))).))).))))))(((....))).....)))).)))))..))))------- ( -31.90) >consensus GAUCUGUUGAGGU______________AAUUGCUUG_GGCAAUUGUUGUGGGAUCUGCUGAGGCAACUGCUUUGGCAACUGUUGCGGCAAUUGUUGAGGUAACUGUUGUGGGA_______ .............................((((((...(((((((((((((.(..(((((((((....)))))))))..).)))))))))))))..)))))).................. (-14.32 = -17.00 + 2.68)
Location | 6,427,289 – 6,427,383 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.09 |
Mean single sequence MFE | -33.43 |
Consensus MFE | -13.55 |
Energy contribution | -12.83 |
Covariance contribution | -0.71 |
Combinations/Pair | 1.48 |
Mean z-score | -1.94 |
Structure conservation index | 0.41 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.588362 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6427289 94 - 22224390 G-----------GCAGUUGUUGAGGUAACUCUGGCUGCGGGAUCUGUUGAGGU--------------AAUUGCUUG-GGCAAUUGUGGAGGGAUCUGCUGAGGCAACUGCUUUGGCAACU .-----------((((((...(((....))).)))))).((((((.((.(..(--------------((((((...-.)))))))).)).))))))((..((((....))))..)).... ( -36.40) >DroGri_CAF1 51889 120 - 1 GUUGCUGUACUGACGGUGGUUGCGGUUGUUGUGGUUUUGGUAUCAGCUGCGGCUUGUUACUGCGAUCAACCGGUGGCGGCAACUGUGACAUUAACUGUGGCGCCAGCUGUGGCGCCAGCU ((((((((.....(((((((((((((.((((..(((........)))..)))).....))))))))).))))...))))))))..............((((((((....))))))))... ( -53.10) >DroSec_CAF1 44277 94 - 1 G-----------UCAGUUGUUGAGGUAACUGUGGCUGCGGGAUCUGUUGCGGU--------------AAUUGGUUG-GGCAAUUGUGGAGGGAUCUGCUGAGGCAACUGUUUUGGUAGCU .-----------.((((((......)))))).((((((.(((...(((((...--------------(((((....-..)))))(..((....))..)....)))))...))).)))))) ( -26.90) >DroSim_CAF1 43016 94 - 1 G-----------UCAGUUGUUGAGGUAACUGUGGCUGCGGGAUCUGCUGUGGU--------------AAUUGGUUG-GGCAAUUGUGGAGGGAUCUGCUGAGGCAACUGUUUUGGUAGCU .-----------.((((((((....((((((..((..(((......)))..))--------------...))))))-)))))))).........((((..((((....))))..)))).. ( -26.00) >DroEre_CAF1 44353 94 - 1 G-----------UCAGUUGUUGGGGUAACUGUUGCUGCGGGAUCUGUUGAGGU--------------AAUUGCUUG-GGCAACUGUUGUGGGAUCUGCUGAGGAAACUGCUUUGGUAACU .-----------.((((((((.((((((((((....)))).((((....))))--------------..)))))).-))))))))..........(((..(((......)))..)))... ( -25.90) >DroYak_CAF1 47050 94 - 1 G-----------GCAGUUGUUGAGGUAACUGUUGCUGCGGGAUCUGUUGGGGU--------------AAUUGCUUG-CGCAAUUGUUGUGGGAUCUGCUGAGGCAGCUGCUUUGGUAACU .-----------..(((((..((((((.((((..(.(((((.((..(.....(--------------((((((...-.)))))))..)..)).))))).)..)))).))))))..))))) ( -32.30) >consensus G___________UCAGUUGUUGAGGUAACUGUGGCUGCGGGAUCUGUUGAGGU______________AAUUGCUUG_GGCAAUUGUGGAGGGAUCUGCUGAGGCAACUGCUUUGGUAACU .............((((((((.((....))...(((.(((......))).)))........................))))))))..........(((((((((....)))))))))... (-13.55 = -12.83 + -0.71)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:36 2006