Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,424,897 – 6,425,011 |
Length | 114 |
Max. P | 0.771408 |
Location | 6,424,897 – 6,425,011 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 95.91 |
Mean single sequence MFE | -41.10 |
Consensus MFE | -37.22 |
Energy contribution | -36.72 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.03 |
Mean z-score | -1.79 |
Structure conservation index | 0.91 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.771408 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6424897 114 + 22224390 AAGCCACCACCAGUGCCUGGUCAUGUGCCGGGAUGGGCCAAGCAAGAGCAGCUGCAUCAUCAGCAAUUGCAGCGAGAGCAAAUGCAGCGUGAGCAGAUGCAACGAGAGCAGUAU ..(((((..(((...((((((.....)))))).))).....((....)).(((((((.....((....)).((....))..)))))))))).))..((((..(....)..)))) ( -38.20) >DroSec_CAF1 41885 114 + 1 AAGCCACCACCAGUGCCUGGUCAUGUGCCGGGUUGGGCAAAGCAAGAGCAGCUGCAUCAUCAGCAAUUGCAGCGAGAGCAAAUGCAGCGUGAGCAGAUGCAACGUGAGCAGUAU ..(((((..(((..(((((((.....))))))))))(((..(((...((((.(((.......))).)))).((....))...))).((....))...)))...))).))..... ( -41.30) >DroEre_CAF1 41823 114 + 1 AAGCCGCCACCAGUGCCUGGUCAUGUGCCGGGAUGGGCCAAGCAAGAGCAGCUGCAUCAUCAGCAAUUGCAGCGAGAGCAAAUGCAGCGCGAGCAGAUGCAACGAGAGCAGUAC ..(((((..(((...((((((.....)))))).))).....((....)).(((((((.....((....)).((....))..)))))))))).))...(((.......))).... ( -39.40) >DroYak_CAF1 44619 114 + 1 AAGCCGCCACCAGUGCCUGGACAUGUGCCGGGGUGGGCCAAGCAAGAGCAGCUGCAUCAUCAGCAAUUGCAGCGAGAGCAAAUGCAGCGCGAGCAGAUGCAGCGAGAGCAGUAU ...(((((.((.(..(........)..).)))))))(((..((....)).((((((((....(((.((((.......)))).))).((....)).))))))))..).))..... ( -45.50) >consensus AAGCCACCACCAGUGCCUGGUCAUGUGCCGGGAUGGGCCAAGCAAGAGCAGCUGCAUCAUCAGCAAUUGCAGCGAGAGCAAAUGCAGCGCGAGCAGAUGCAACGAGAGCAGUAU ..(((((..(((...(((((.......))))).))).....((....)).(((((((.....((....)).((....))..)))))))))).))...(((.......))).... (-37.22 = -36.72 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:34 2006