Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,393,134 – 6,393,235 |
Length | 101 |
Max. P | 0.599166 |
Location | 6,393,134 – 6,393,235 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 80.62 |
Mean single sequence MFE | -26.22 |
Consensus MFE | -16.45 |
Energy contribution | -18.40 |
Covariance contribution | 1.95 |
Combinations/Pair | 1.16 |
Mean z-score | -1.61 |
Structure conservation index | 0.63 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599166 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6393134 101 - 22224390 -AGUCAUUAGUGCAGGUGGAGUUUUUUUG------------UUUCGCUGGCC--GGAAAGCCAUUUGCACUGUUUUCUCAAAUUAUAGUUGGCUCAAUUUGAAGCCAAGCUUGAGA -......((((((((((((...((((..(------------((.....))).--.)))).))))))))))))...(((((......(((((((((.....).)))).))))))))) ( -30.20) >DroSec_CAF1 18704 99 - 1 -AGUCAUUAGUGCA-GUGGAGUUU-UUUG------------UUUCGCUGGCCCGGGAAGGCCAUUUGCACUGUUUUCUCAAAUUAUAGUUGGCUUAA--UGAAGCCAAGCUUGCGA -......(((((((-((((((...-....------------))))))(((((......)))))..)))))))................(((((((..--..)))))))........ ( -28.40) >DroSim_CAF1 19944 100 - 1 -AGUCAUUAGUGCAGGUGGAGUUU-UUUG------------UUUCGCUGGCC--GGAAAGCCAUUUGCACUGUUUUCUCAAAUUAUAGUUGGCUUAAUUUGAAGCCAAGCUUGCGA -......((((((((((((..(((-(..(------------((.....))).--.)))).))))))))))))................(((((((......)))))))........ ( -28.90) >DroEre_CAF1 18617 89 - 1 GAGUCAUUAGUGCAGGUGGAGUUU-UUUG------------UUUCGCUGGCC--GGAAAGCCAUUUGCGCUGUUUUCUCAAAUUAUAGUUUGCUUAAUUU-AAGC----------- (((....((((((((((((..(((-(..(------------((.....))).--.)))).))))))))))))....)))............(((((...)-))))----------- ( -25.90) >DroYak_CAF1 20162 89 - 1 -AGUCAUUAGUGCAGGUGGAGUUU-UUUG------------UUUCGCUGGCC--GGAAAGCCAUUUGCACUGUUUUCUCAAAUUAUAGUUUGCCUAAUUUGAAGC----------- -......((((((((((((..(((-(..(------------((.....))).--.)))).)))))))))))).....((((((((.........))))))))...----------- ( -24.40) >DroAna_CAF1 25738 112 - 1 -AGUCAUUAGUGCAGGUGGAGUUU-UUUUUAAUUUUUGUAUUUUUUUUGGCC--GGAAAGCGAUUUGCACUGUUUUCUCAAAUUAAAGUUGAUUUCAUAUAUCUACAAGGCUACAA -((((..(((.....((((((((.-.(((((((((..((..........)).--((((((((........)))))))).)))))))))..))))))))....)))...)))).... ( -19.50) >consensus _AGUCAUUAGUGCAGGUGGAGUUU_UUUG____________UUUCGCUGGCC__GGAAAGCCAUUUGCACUGUUUUCUCAAAUUAUAGUUGGCUUAAUUUGAAGCCAAGCUUGCGA .......((((((((((((((.....................)))(((..(....)..))))))))))))))................(((((((......)))))))........ (-16.45 = -18.40 + 1.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:24 2006