Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,379,670 – 6,379,771 |
Length | 101 |
Max. P | 0.575108 |
Location | 6,379,670 – 6,379,771 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 92.57 |
Mean single sequence MFE | -47.52 |
Consensus MFE | -42.18 |
Energy contribution | -42.58 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.07 |
Mean z-score | -1.18 |
Structure conservation index | 0.89 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.575108 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6379670 101 - 22224390 GUUCACGGGCGGCCCACCGGAUCCGGCGGUGGACAGGGCCAUGGUGGCACAACUGGAGGCGGCGCUACCUCCGCCACCGGGAACAACGGAUCCGGAUGCCG (((....)))(((...(((((((((..(((((.(...(((.....)))......(((((........)))))))))))(....)..)))))))))..))). ( -48.10) >DroSec_CAF1 5173 101 - 1 GUUCACGGGCGGUCCACCGGAUCCGGCGGUGGACAGGGCCAUGGUGGCACAACUGGAGGCGGCGCUACCUCCGCCACCGGGAACAACGGAUCCGGAUGCCG .......((((.....(((((((((..(((((.(...(((.....)))......(((((........)))))))))))(....)..))))))))).)))). ( -47.10) >DroSim_CAF1 5349 101 - 1 GUUCACGGGCGGUCCACCGGAUCCGGCGGUGGACAGGGCCAUGGUGGCACAACUGGAGGCGGCGCUACCUCCGCCACCGGGAACAACGGAUCCGGAUGCCG .......((((.....(((((((((..(((((.(...(((.....)))......(((((........)))))))))))(....)..))))))))).)))). ( -47.10) >DroEre_CAF1 5592 101 - 1 GUUCACGGGCGGUCCACCGGAUCCGGAGGUGGACAGGGGCAUGGUGCCACAACUGGAGGCGGCGUUUCCUCCGCCACCGGGAACGACGGAUCCUGAUGCCG .......(((((....))(((((((..(((((.((......))...))))..((((.(((((.(....).))))).))))...)..)))))))....))). ( -45.00) >DroYak_CAF1 5373 101 - 1 GUUCACGGGCGGACCACCGGAUCCGGCGGUGGACAUUGGCAUGGUGGCACAACUGAAGGCGCUGUUUCCACCGCCAUCGGAAACGACGGAUCCGGAUGCCG .......((((.....(((((((((((((((((.((.(((.((((......))))...)).).)).))))))))).(((....))).)))))))).)))). ( -50.30) >consensus GUUCACGGGCGGUCCACCGGAUCCGGCGGUGGACAGGGCCAUGGUGGCACAACUGGAGGCGGCGCUACCUCCGCCACCGGGAACAACGGAUCCGGAUGCCG .......((((.....(((((((((..(((((.(...(((.....)))......(((((........)))))))))))(....)..))))))))).)))). (-42.18 = -42.58 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:21 2006