Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,376,887 – 6,376,991 |
Length | 104 |
Max. P | 0.744641 |
Location | 6,376,887 – 6,376,991 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 87.17 |
Mean single sequence MFE | -34.48 |
Consensus MFE | -25.48 |
Energy contribution | -26.64 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.19 |
Mean z-score | -1.88 |
Structure conservation index | 0.74 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.744641 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6376887 104 - 22224390 CAAUCACGUUGCGAUGAUGAAAAAAUUUCUUCAACUCAAGGCUUCUCGCUUCCGGCGGCUAGCAGGUU-AUCCUGCU--CCGGCGGAGUGGGUUGCUGCCAUGUAGA .....((((.((..(((.(((.....))).)))......(((..((((((.(((.(((..((((((..-..))))))--))).)))))))))..))))).))))... ( -39.60) >DroSec_CAF1 2416 104 - 1 CAAUCACUUUGCGAUGAUGAAACAAUUUCUUCAACUCAAGGCUUCUCGCUUCUGGCGGCUGACAGGUC-AUCCUGCU--CCGGCGAAGUCGGUCGCUUCCAUGUAGA ......(((((.(.(((.(((.....))).))).).)))))..(((.((....(((((((((((((..-..)))((.--...))...)))))))))).....))))) ( -29.00) >DroSim_CAF1 2577 104 - 1 CAAUCACGUUGCGAUGAUGAAACAAUUUCUUCAACUCAAGGCUUCUCGCUUCCGGCGGCUGACAGGUC-AUCCUGCU--CCGGCGGAGUGGGUCGCUGCCAUGUAGA .....((((.((..(((.(((.....))).)))......(((..((((((.(((.(((..(.((((..-..))))).--))).)))))))))..))))).))))... ( -35.70) >DroEre_CAF1 2742 102 - 1 CAAUCUCGUUGCGAUGAUGAAAAAAUUUCUUCAACUCAAGGCUUCCCGCAUUC---UGCUAGCAGGUCAAUUCUGCU--CAGUAGGAGUGGGUCGCUGCCAUGUAGA ...((((((.((..(((.(((.....))).)))......(((..(((((.(((---((((((((((.....))))))--.))))))))))))..))))).))).))) ( -36.20) >DroYak_CAF1 2570 104 - 1 CAAUCUCGUUGCGAUGAUGAAAAAAUUUCUUCAACUCAAGGCAUCUCGCUCCC---GGCUAGCAGGUAAAUCCUGCUCCCAGGUGUAGUGGGUCGCUGCCAUGUAGA ...((((((.((..(((.(((.....))).)))......(((..(((((((((---((..((((((.....)))))).)).)).).))))))..))))).))).))) ( -31.90) >consensus CAAUCACGUUGCGAUGAUGAAAAAAUUUCUUCAACUCAAGGCUUCUCGCUUCCGGCGGCUAGCAGGUC_AUCCUGCU__CCGGCGGAGUGGGUCGCUGCCAUGUAGA ........(((((.(((.(((.....))).)))......(((..(((((.((((.(((..((((((.....))))))..))).)))))))))..)))....))))). (-25.48 = -26.64 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:20 2006